View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912_low_9 (Length: 318)

Name: NF8912_low_9
Description: NF8912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912_low_9
NF8912_low_9
[»] chr6 (20 HSPs)
chr6 (122-263)||(2982559-2982700)
chr6 (121-264)||(2934285-2934428)
chr6 (121-263)||(3004031-3004173)
chr6 (140-261)||(2951647-2951768)
chr6 (139-244)||(2997666-2997771)
chr6 (121-261)||(2926846-2926986)
chr6 (106-261)||(2659255-2659410)
chr6 (140-259)||(2964193-2964312)
chr6 (19-88)||(2930101-2930170)
chr6 (19-108)||(2952742-2952831)
chr6 (19-108)||(3002964-3003053)
chr6 (19-108)||(2974791-2974880)
chr6 (150-256)||(2973728-2973834)
chr6 (19-108)||(2935393-2935482)
chr6 (27-107)||(2979775-2979855)
chr6 (27-66)||(2954882-2954921)
chr6 (77-108)||(2965366-2965397)
chr6 (79-108)||(2927956-2927985)
chr6 (27-56)||(2986546-2986575)
chr6 (79-108)||(2986579-2986608)
[»] chr7 (1 HSPs)
chr7 (131-259)||(3338877-3339005)
[»] scaffold0024 (3 HSPs)
scaffold0024 (122-261)||(35476-35618)
scaffold0024 (49-92)||(34257-34300)
scaffold0024 (26-102)||(43551-43629)
[»] chr3 (1 HSPs)
chr3 (119-236)||(49618079-49618196)


Alignment Details
Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 122 - 263
Target Start/End: Original strand, 2982559 - 2982700
Alignment:
Q  122 tttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagtta 221  Q
    |||||||  ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || | |||||||||||| |||||||||||||||||    
T  2982559 tttaaacgacttggtctgctacgtagattctatcttatctgatttcaaacactgttattctgaacccctaccattttctcataatgaacttgttaagtta 2982658  T
Q  222 atcttaatcgattcctgttttattattcaacatttttggaga 263  Q
    |||||||||||||||  |||||| ||||||| ||||||||||    
T  2982659 atcttaatcgattccgcttttataattcaacttttttggaga 2982700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 121 - 264
Target Start/End: Original strand, 2934285 - 2934428
Alignment:
Q  121 gtttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagtt 220  Q
    ||||||||  ||| ||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||    
T  2934285 gtttaaacgacttagtctgctacatagaatctatcttatctgatttcaaacgttgttattctgaaaccctaccattttctcatgatgaacttgttaagtt 2934384  T
Q  221 aatcttaatcgattcctgttttattattcaacatttttggagag 264  Q
    ||| ||||| ||||||  |||||| ||||||| |||||||||||    
T  2934385 aattttaatagattccgcttttataattcaacttttttggagag 2934428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 121 - 263
Target Start/End: Complemental strand, 3004173 - 3004031
Alignment:
Q  121 gtttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagtt 220  Q
    ||||||||  ||| ||| ||||| |||| ||| ||||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||    
T  3004173 gtttaaacgacttagtctgctacatagaatctgtcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagtt 3004074  T
Q  221 aatcttaatcgattcctgttttattattcaacatttttggaga 263  Q
    ||||||||||||||||  |||||| ||||||| ||||||||||    
T  3004073 aatcttaatcgattccgcttttataattcaacttttttggaga 3004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 2951647 - 2951768
Alignment:
Q  140 ctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagttaatcttaatcgattcctgt 239  Q
    |||| |||| ||||||||||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||  |    
T  2951647 ctacatagaatctatcttatctgatttcaaaagttgttattctgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgct 2951746  T
Q  240 tttattattcaacatttttgga 261  Q
    ||||| ||||||| ||||||||    
T  2951747 tttataattcaacttttttgga 2951768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 2997771 - 2997666
Alignment:
Q  139 gctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagttaatcttaatcgattcctg 238  Q
    ||||||||||||||||||||||| |||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||| |    
T  2997771 gctacgtagattctatcttatctaatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgg 2997672  T
Q  239 ttttat 244  Q
    ||||||    
T  2997671 ttttat 2997666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 121 - 261
Target Start/End: Original strand, 2926846 - 2926986
Alignment:
Q  121 gtttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagtt 220  Q
    ||||||||  ||| ||| ||||| |||| ||||||||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||    
T  2926846 gtttaaacgacttagtcggctacatagaatctatcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagtt 2926945  T
Q  221 aatcttaatcgattcctgttttattattcaacatttttgga 261  Q
    |||||||||| |||||  |||||| ||||||| ||||||||    
T  2926946 aatcttaatcaattccgcttttataattcaacttttttgga 2926986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 106 - 261
Target Start/End: Complemental strand, 2659410 - 2659255
Alignment:
Q  106 aacgaaccaacacaagtttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatga 205  Q
    ||||||||||  || ||||| |||||||||||||| || || | |||| |||||||  ||||||| | |||||||| |||||| | ||||||||| || |    
T  2659410 aacgaaccaatgcatgtttagacaccttggtcagcaacataaaatctaacttatctcgtttcaaaagttgttattccgaaaccctaccattttctgataa 2659311  T
Q  206 tgaacttgttaagttaatcttaatcgattcctgttttattattcaacatttttgga 261  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  2659310 tgaacttgttaagttaatcttaatcgattcctgttttataattcaacttttttgga 2659255  T

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Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 259
Target Start/End: Original strand, 2964193 - 2964312
Alignment:
Q  140 ctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagttaatcttaatcgattcctgt 239  Q
    |||| ||||| |||||||||||||||||||| |||||||||| |||||  | ||||||||||||||||||||||| ||||||||||||||||||||  ||    
T  2964193 ctacatagatgctatcttatctgatttcaaatgctgttattccgaaactctaccattttctcatgatgaacttgtcaagttaatcttaatcgattctggt 2964292  T
Q  240 tttattattcaacatttttg 259  Q
    ||||| ||| ||| ||||||    
T  2964293 tttataattgaacttttttg 2964312  T

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Target: chr6; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 2930101 - 2930170
Alignment:
Q  19 gtgttgtattagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacgagcaacttgatc 88  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2930101 gtgttgtattagatcaaaattgtaatttcatataaataggtgttctgctaaacaaacgagcaacttgatc 2930170  T

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Target: chr6; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 2952742 - 2952831
Alignment:
Q  19 gtgttgtattagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacgagcaacttgatcatgttgtattgttgttgaac 108  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  2952742 gtgttgcattagattgaaattgtaatttcatataaatgggtgttctgctaaataaaaaagcaacttgatcatgttgtattgttgttgaac 2952831  T

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Target: chr6; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 3003053 - 3002964
Alignment:
Q  19 gtgttgtattagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacgagcaacttgatcatgttgtattgttgttgaac 108  Q
    |||||| || |||| |||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  3003053 gtgttgcatcagattgaaattgtaatttcatataaataggtgttctgctgaataaaagagcaacttgatcatgttgtattgttgttgaac 3002964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 2974791 - 2974880
Alignment:
Q  19 gtgttgtattagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacgagcaacttgatcatgttgtattgttgttgaac 108  Q
    |||||| ||||||| |||||| |||||||||||||||||| ||||||||||| | |  ||||||||||||||||||||||||||||||||    
T  2974791 gtgttgcattagattgaaattataatttcatataaataggagttctgctaaatagaaaagcaacttgatcatgttgtattgttgttgaac 2974880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 2973728 - 2973834
Alignment:
Q  150 tctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagttaatcttaatcgattcctgttttattattc 249  Q
    ||||||||||||||||||||| ||||||||||  ||||| |  |||||||||||  |||||||||||||||||| ||||| |||||| ||||||| |||     
T  2973728 tctatcttatctgatttcaaaggctgttattccaaaaccctatcattttctcatattgaacttgttaagttaattttaatggattccggttttataattg 2973827  T
Q  250 aacattt 256  Q
    |||||||    
T  2973828 aacattt 2973834  T

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Target: chr6; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 2935393 - 2935482
Alignment:
Q  19 gtgttgtattagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacgagcaacttgatcatgttgtattgttgttgaac 108  Q
    |||||| ||||||| |||||||||||||||||||||| ||||||||| |||| |||  ||||  ||||||||||||||||||||||||||    
T  2935393 gtgttgcattagattgaaattgtaatttcatataaatgggtgttctgttaaataaaaaagcatattgatcatgttgtattgttgttgaac 2935482  T

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Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 2979775 - 2979855
Alignment:
Q  27 ttagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacgagcaacttgatcatgttgtattgttgttgaa 107  Q
    |||||| |||||||||| ||||||||||| |||||||||| ||| |||  |||||||| ||||||||| ||||||||||||    
T  2979775 ttagattgaaattgtaagttcatataaattggtgttctgccaaataaaaaagcaactttatcatgttgcattgttgttgaa 2979855  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 2954882 - 2954921
Alignment:
Q  27 ttagatcgaaattgtaatttcatataaataggtgttctgc 66  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  2954882 ttagatcgatattgtaatttcatataaataggtcttctgc 2954921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 108
Target Start/End: Original strand, 2965366 - 2965397
Alignment:
Q  77 agcaacttgatcatgttgtattgttgttgaac 108  Q
    ||||||||||||||||||||||||||||||||    
T  2965366 agcaacttgatcatgttgtattgttgttgaac 2965397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 108
Target Start/End: Original strand, 2927956 - 2927985
Alignment:
Q  79 caacttgatcatgttgtattgttgttgaac 108  Q
    ||||||||||||||||||||||||||||||    
T  2927956 caacttgatcatgttgtattgttgttgaac 2927985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 2986546 - 2986575
Alignment:
Q  27 ttagatcgaaattgtaatttcatataaata 56  Q
    ||||||||||||||||||||||||||||||    
T  2986546 ttagatcgaaattgtaatttcatataaata 2986575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 108
Target Start/End: Original strand, 2986579 - 2986608
Alignment:
Q  79 caacttgatcatgttgtattgttgttgaac 108  Q
    ||||||||||||||||||||||||||||||    
T  2986579 caacttgatcatgttgtattgttgttgaac 2986608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 3338877 - 3339005
Alignment:
Q  131 cttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaagttaatcttaatc 230  Q
    |||||||  ||||||||| ||||||||| ||||||||||||| |||||||| |||  | |  |||||||| ||||| |||||||||||||||||||||||    
T  3338877 cttggtcttctacgtagagtctatcttacctgatttcaaacgttgttattcggaattcctaacattttctgatgataaacttgttaagttaatcttaatc 3338976  T
Q  231 gattcctgttttattattcaacatttttg 259  Q
    |||||| ||||||| ||||||| ||||||    
T  3338977 gattccggttttataattcaacttttttg 3339005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 35618 - 35476
Alignment:
Q  122 tttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaa---cttgttaag 218  Q
    ||||| || |||| ||||| || || ||||||||||||||||||||||| | |||||||| |||||| |  ||||| |||| ||||||   |||||||||    
T  35618 tttaagcatcttgatcagcgacatatattctatcttatctgatttcaaatgttgttattcggaaaccctatcatttcctcaggatgaagaacttgttaag 35519  T
Q  219 ttaatcttaatcgattcctgttttattattcaacatttttgga 261  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||    
T  35518 ttaatcttaatcgattccggttttataattcaacttttttgga 35476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 34300 - 34257
Alignment:
Q  49 tataaataggtgttctgctaaacaaacgagcaacttgatcatgt 92  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  34300 tataaataggtgttctgctaaataaaagagcaacttgatcatgt 34257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 43629 - 43551
Alignment:
Q  26 attagatcgaaattgtaatttcatataa--ataggtgttctgctaaacaaacgagcaacttgatcatgttgtattgttg 102  Q
    ||||||| ||||||||||||||||||||  |||||| |||||| |||||||  ||||||||| |||  || ||||||||    
T  43629 attagattgaaattgtaatttcatataaatataggtcttctgccaaacaaaaaagcaacttggtcagattttattgttg 43551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 49618079 - 49618196
Alignment:
Q  119 aagtttaaacaccttggtcagctacgtagattctatcttatctgatttcaaacgctgttattctgaaaccttcccattttctcatgatgaacttgttaag 218  Q
    |||||| ||||| ||| || ||||| ||||||| ||||||||| ||||||| | || ||||||  ||||| | | |||| ||||||||||| ||||||||    
T  49618079 aagtttgaacacgttgttctgctacatagattccatcttatctcatttcaatcactcttattccaaaaccctacaatttactcatgatgaatttgttaag 49618178  T
Q  219 ttaatcttaatcgattcc 236  Q
    ||||||||||| ||||||    
T  49618179 ttaatcttaattgattcc 49618196  T

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