View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8913_high_2 (Length: 495)
Name: NF8913_high_2
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 17106924 - 17107219
Alignment:
| Q |
19 |
acgtatgtgtgttcaatttcatttgcttttagaacctttctcataatgcatgtttctgtactcattggtacgtttttattatgttcaatctcatggtctt |
118 |
Q |
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| T |
17106924 |
acgtatgtgtgttcaatttcatttgcttttagaacctttctcataatgcatgtttctgtactcattcgtacgtttttattatgttcaatttcatcatctt |
17107023 |
T |
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| Q |
119 |
ctctaggaactagtcataacacttccttgttggttgaaaaagttgttagcagttcagttggtccagataatcttgcaggagtagaaactagtttccatca |
218 |
Q |
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| T |
17107024 |
ctctaggaactagtcataacacttccttgttggttgaaaaagttgttagcagttcagttggtccagataatcttgcaggagtagaaactagtttccatca |
17107123 |
T |
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| Q |
219 |
tattattaatggctctgcttcaacttcaaggttgtcattgatttgcatcggcttccaattatctcatcgacctttgcaccgattttgagtttttca |
314 |
Q |
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| T |
17107124 |
tattattaatggctctgcttcaacttcaaggttgtcattgatttgcatcggcttccaattatctcatcgacctttgcaccaattttgtgtttttca |
17107219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 311 - 482
Target Start/End: Original strand, 17107249 - 17107421
Alignment:
| Q |
311 |
ttcattctatcttaaccaccctcaaccattaaaggaaaaattacgtgtttcctctggtttgtcgactcccaattgtcaagaaaatcaac-gcctgttaaa |
409 |
Q |
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| T |
17107249 |
ttcattctatcttaaccaccctcaaccattaaaggaaaaattacgtgtttcctctggtttgccgactcccagttgtcaagaaaatcaagtgcctgttaaa |
17107348 |
T |
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| Q |
410 |
tatgtttgaatttgttttgcatcgtccttcgacatttgttcatttatcctcttccaaatgcaccataacacca |
482 |
Q |
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| T |
17107349 |
tatgtttgaatttgttttgcatcgtccttcgacatttgttcatttatcctcttccaaatgcaccataacacca |
17107421 |
T |
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