View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8913_low_10 (Length: 491)
Name: NF8913_low_10
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_10 |
 | |
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| [»] scaffold0246 (1 HSPs) |
| | |
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| [»] scaffold0048 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 4938901 - 4939145
Alignment:
| Q |
19 |
aaatatctctacactctacttgaatttgtaggattagatcaactaaatgagtttannnnnnnggttttacaagagatcctaagtttaaattcggttacgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| |
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| T |
4938901 |
aaatatctctacactctacttgaatttgtaggattagatcaactaaatgagtcttttttttaagttttacaagagatcctaagtttgaattcggttacgt |
4939000 |
T |
|
| Q |
119 |
gaatcaacaatgataaatttaccatgcatagaatatcaaatttacacaaaa--ttataatttagaatgatatatgtaattacaaaatataatcaagttcg |
216 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4939001 |
gaatcaacaatgataaatttaccacgcatagaatatcaaatttacacaaaaaattataatttagaatgatatatgtaattacaaaatataatcaagttcg |
4939100 |
T |
|
| Q |
217 |
gtcgtctttctagatctactattgaatatattattgaaactattc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4939101 |
gtcgtctttctagatctactattgaatatattattgaaactattc |
4939145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 327 - 483
Target Start/End: Original strand, 4939211 - 4939366
Alignment:
| Q |
327 |
gaagaaatcaaaatgagatatattaacaatggcgatgagagctccctagtacaagttgtattagagaggccatctcaaaaaacaagtcgtcttaaaaagt |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| |||||| ||||| |
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|
| T |
4939211 |
gaagaaatcaaaatgagatatattaacaatggcgatgagagctccctagtacaagttgtattagagaggccatc-ccaaaagcaagctgtcttacaaagt |
4939309 |
T |
|
| Q |
427 |
atgtataagataaaaaggtcagtcaagatccaaacacaataaggaatccgaacacca |
483 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
4939310 |
atgtataagataaaaaggtcagtcaagacccaaacacaataaggaatccgaacacca |
4939366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 462
Target Start/End: Complemental strand, 19015343 - 19015211
Alignment:
| Q |
328 |
aagaaatcaaaatgagatatattaacaatggcgatgagagctccctagtacaagttgtattagagaggccatctcaaaaaacaagtcgtcttaaaaagta |
427 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| | |||| ||| ||||| |||| ||||||| |||||| |
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|
| T |
19015343 |
aagaaatcaaaatgagatatattaataatggcggtgagagctccctagtacaagatgtatcaaagagaccactccaaaagacaaaccgtcttacaaagta |
19015244 |
T |
|
| Q |
428 |
tgtataagataaaaaggtcagtcaagatccaaaca |
462 |
Q |
| |
|
|||| |||||||| |||||| ||| ||||||| |
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| T |
19015243 |
--tatacaataaaaagatcagtctagacccaaaca |
19015211 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 361 - 483
Target Start/End: Original strand, 36379554 - 36379675
Alignment:
| Q |
361 |
atgagagctccctagtacaagttgtattagagaggccatctcaaaaaacaagtcgtcttaaaaagtatgtataagataaaaaggtcagtcaagatccaaa |
460 |
Q |
| |
|
|||| |||||||| |||||| |||||| | |||||||| | ||||| |||| ||||||| ||||||| | ||||||||||| |||||||||| ||||| |
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| T |
36379554 |
atgaaagctccctcgtacaaattgtataa-agaggccaccccaaaagacaaaccgtcttacaaagtatacacaagataaaaagatcagtcaagacccaaa |
36379652 |
T |
|
| Q |
461 |
cacaataaggaatccgaacacca |
483 |
Q |
| |
|
|||||||| |||||| ||||| |
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|
| T |
36379653 |
tacaataagagatccgaccacca |
36379675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 328 - 470
Target Start/End: Complemental strand, 44846451 - 44846309
Alignment:
| Q |
328 |
aagaaatcaaaatgagatatattaacaatggcgatgagagctccctagtacaagttgtattagagaggccatctcaaaaaacaagtcgtcttaaaaagta |
427 |
Q |
| |
|
||||||| |||||| ||||||||||||||| |||||| | |||| ||||| ||||||||| | |||||||||| ||||| |||| ||||||| |||||| |
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|
| T |
44846451 |
aagaaattaaaatgggatatattaacaatgacgatgaaaactccatagtataagttgtatcaaagaggccatcccaaaagacaatccgtcttacaaagta |
44846352 |
T |
|
| Q |
428 |
tgtataagataaaaaggtcagtcaagatccaaacacaataagg |
470 |
Q |
| |
|
| || ||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
44846351 |
tttacaagataataaggtcagtcaagacccaaacacaataagg |
44846309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 483
Target Start/End: Original strand, 21570 - 21723
Alignment:
| Q |
328 |
aagaaatcaaaatgagatatattaacaatggcgatgagagctccctagtacaagttgtattagagaggccatctcaaaaaacaagtcgtcttaaaaagta |
427 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||| || ||| ||| | ||||| |||| ||||||| |||||| |
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|
| T |
21570 |
aagaaatcaaaatgtgatatattaacaatggcgatgaaa-ctctctagtacaagttgtactacggag-ccaccccaaaagacaacccgtcttacaaagta |
21667 |
T |
|
| Q |
428 |
tgtataagataaaaaggtcagtcaagatccaaacacaataaggaatccgaacacca |
483 |
Q |
| |
|
| || ||||||| || ||||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
21668 |
tttacaagataataatgtcagtcaagacccaaacacaataaggggtccgaccacca |
21723 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 483
Target Start/End: Original strand, 40483631 - 40483784
Alignment:
| Q |
328 |
aagaaatcaaaatgagatatattaacaatggcgatgagagctccctagtacaagttgtattagagaggccatctcaaaaaacaagtcgtcttaaaaagta |
427 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||| || ||| ||| | ||||| |||| ||||||| |||||| |
|
|
| T |
40483631 |
aagaaatcaaaatgtgatatattaacaatggcgatgaaa-ctctctagtacaagttgtactacggag-ccaccccaaaagacaacccgtcttacaaagta |
40483728 |
T |
|
| Q |
428 |
tgtataagataaaaaggtcagtcaagatccaaacacaataaggaatccgaacacca |
483 |
Q |
| |
|
| || ||||||| || ||||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
40483729 |
tttacaagataataatgtcagtcaagacccaaacacaataaggggtccgaccacca |
40483784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 42272405 - 42272464
Alignment:
| Q |
327 |
gaagaaatcaaaatgagatatattaacaatggcgatgagagctccctagtacaagttgta |
386 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
42272405 |
gaagaaatcaaaatgaaatatattaacaatggcggtgagagctccctagtacaagatgta |
42272464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 55899828 - 55899886
Alignment:
| Q |
328 |
aagaaatcaaaatgagatatattaacaatggcgatgagagctccctagtacaagttgta |
386 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
55899828 |
aagaaatcaaaacgggatatattaacaatggcggtgagagctccctagtacaagatgta |
55899886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 360
Target Start/End: Original strand, 9689896 - 9689928
Alignment:
| Q |
328 |
aagaaatcaaaatgagatatattaacaatggcg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
9689896 |
aagaaatcaaaatgagatatattaacaacggcg |
9689928 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 470
Target Start/End: Original strand, 8384274 - 8384417
Alignment:
| Q |
327 |
gaagaaatcaaaatgagatatattaacaatggcgatgagagctccctagtacaagttgtattagagaggccatctcaaaaaacaagtcgtcttaaaaagt |
426 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |||| | |||| || | ||| |||| | ||||| ||||| |
|
|
| T |
8384274 |
gaagaaatcaaaatgggatatattaacaatggcgatgcgagctccctagtataagatgtaccaaagagatcacccttaaagacaaaccatcttacaaagt |
8384373 |
T |
|
| Q |
427 |
atgtataagataaaaaggtcagtcaagatccaaacacaataagg |
470 |
Q |
| |
|
|| || ||||||||||| |||||||||| | ||||| ||||||| |
|
|
| T |
8384374 |
atatacaagataaaaagatcagtcaagacctaaacataataagg |
8384417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 438
Target Start/End: Complemental strand, 64422 - 64312
Alignment:
| Q |
328 |
aagaaatcaaaatgagatatattaacaatggcgatgagagctccctagtacaagttgtattagagaggccatctcaaaaaacaagtcgtcttaaaaagta |
427 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||| | |||| ||| ||||||| |||| ||||||| |||||| |
|
|
| T |
64422 |
aagaaatcaaaatggattatattaataatggcgatgagaattccctagtacaagatgtaccaaagagaccacctcaaaagacaaaccgtcttacaaagta |
64323 |
T |
|
| Q |
428 |
tgtataagata |
438 |
Q |
| |
|
| || |||||| |
|
|
| T |
64322 |
tttacaagata |
64312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 51101 - 51052
Alignment:
| Q |
328 |
aagaaatcaaaatgagatatattaacaatggcgatgagagctccctagta |
377 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| |||||||||| |
|
|
| T |
51101 |
aagaaatcaaaatggattatattaataatggcgatgagaactccctagta |
51052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 438
Target Start/End: Original strand, 9492146 - 9492256
Alignment:
| Q |
328 |
aagaaatcaaaatgagatatattaacaatggcgatgagagctccctagtacaagttgtattagagaggccatctcaaaaaacaagtcgtcttaaaaagta |
427 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||| |||| |||||||||||||| |||| | |||| ||| | ||||| |||| ||||||| |||||| |
|
|
| T |
9492146 |
aagaattcaaaatgggatatattaagaatggcgaagagaactccctagtacaagatgtaccaaagagaccaccccaaaagacaaaccgtcttacaaagta |
9492245 |
T |
|
| Q |
428 |
tgtataagata |
438 |
Q |
| |
|
| || |||||| |
|
|
| T |
9492246 |
tatacaagata |
9492256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 31770340 - 31770304
Alignment:
| Q |
327 |
gaagaaatcaaaatgagatatattaacaatggcgatg |
363 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
31770340 |
gaagagatcaaaatgaaatatattaacaatggcgatg |
31770304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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