View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8913_low_11 (Length: 424)
Name: NF8913_low_11
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Original strand, 30262074 - 30262477
Alignment:
| Q |
16 |
atctgaatagtgtgccgtctttttcgcctccttgtcttgttttgcaagaaggaaagaggaaggtcatcatcattttcttccacattgatgtttgtgggtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30262074 |
atctgaatagtgtgccgtctttttcgcctccttgtcttgttttgcaagaaggaaagaggaaggtcatcatcattttcttccacattgatgtttgtgggtt |
30262173 |
T |
|
| Q |
116 |
cagcatcagcaacactaccatgcagatcagtctcctcttcaacgacattgatgttcgtgggttcggcttcagccacaccaccatgtaaaacagtctcctc |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30262174 |
cagcatcagcaacactaccatgcagatcagtctcctcttcaacgacattgatgttcgtgggttcggcttcagccacaccaccatgtaaaacagtctcctc |
30262273 |
T |
|
| Q |
216 |
tacaacaatttttgacatggatggttcactgccgtcagaaatgatggctggcttgtttccatggagtaacgtagatccctttttcaatttggaaggagag |
315 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30262274 |
tacaacaacttttgacatggatggttcactgccatcagaaatgatggctggcttgtttccatggagtaacatagatccctttttcaatttggaaggagag |
30262373 |
T |
|
| Q |
316 |
caagcacagcatccttcagtatcttcactccatttctttgttttccttctcacatagacctgaagaggcttatcattgccatcaccattcatatgatgtc |
415 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30262374 |
caagcacggcatccttcagtatcttcactccatttctttgttttccttctcacatagacctgaagaggcttatcattgccatcaccattcatattatgtg |
30262473 |
T |
|
| Q |
416 |
catc |
419 |
Q |
| |
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|||| |
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| T |
30262474 |
catc |
30262477 |
T |
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