View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8913_low_12 (Length: 403)
Name: NF8913_low_12
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_12 |
 | |
|
| [»] scaffold0002 (3 HSPs) |
| | |
|
| [»] scaffold0263 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 401926 - 401552
Alignment:
| Q |
17 |
ttaagaaggagaagtagccttataaaagggcatgcataaattagagttactcattccaatctatctaaaccccaacatatagaaaacacaaaaaacaaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
401926 |
ttaagaaggagaagtagccttataaaagggaatgcataaattagagttactcattccaatctatctaaaccccaacataaagaaaacacaaaaaacaaag |
401827 |
T |
|
| Q |
117 |
tatatattaatttctcatatatcgatcctccaaaatgtcaacagctcctatcatcggtgacaatgatgtgaatccagtcatttttagagaatacattggc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
401826 |
tatatattaatttctcatatatcgatcctccaaaatgtcaacagctcctatcatcggtgacaatgatgtgaatccagtcatttttagagaatacattggc |
401727 |
T |
|
| Q |
217 |
gtcaagtcctacccagattctttaaataatttcccagctgatattatcggccgccacatccctgaattccatttcattttgggctttgcccatgagactt |
316 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
401726 |
gtgaagtcctacccagattctttaaataatttcccagctgatattatcggccgccacatccctgaattccatttcattttgggctttgcccatgagactt |
401627 |
T |
|
| Q |
317 |
acgtcgatggaaaaggcaccggaattttcaacgccagttggaagattcctttcttcagtccagacaatgttgatg |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
401626 |
acgtcgatggaaaaggcaccggaattttcaacgccagttggaagattcctttctttggtccagacaatgttgatg |
401552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 405438 - 405323
Alignment:
| Q |
54 |
aaattagagttactcattccaatctatctaaaccccaacatatagaaaacacaa-aaaacaaagtatatattaatttctcatatatcgatcctccaaaat |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
405438 |
aaattagagttactcattccaatctatctaaaccccaacatatggaaaacacaaaaaaagaaattatatattaatttctcatatatcgatcctccgaaat |
405339 |
T |
|
| Q |
153 |
gtcaacagctcctatc |
168 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
405338 |
gtcaacagctcctatc |
405323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 93611 - 93525
Alignment:
| Q |
166 |
atcatcggtgacaatgatgtgaatccagtcatttttagagaatacattggcgtcaagtcctacccagattctttaaataatttccca |
252 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||||||| |||||||||||||||| ||| | ||||||| |||| | |||||||||||| |
|
|
| T |
93611 |
atcatcggtgacaatgctgttgatccattcatttttcgagaatacattggcgtgaagccatacccagcttctcttaataatttccca |
93525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 15441 - 15355
Alignment:
| Q |
166 |
atcatcggtgacaatgatgtgaatccagtcatttttagagaatacattggcgtcaagtcctacccagattctttaaataatttccca |
252 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||||||| |||||||||||||||| ||| | ||||||| |||| | |||||||||||| |
|
|
| T |
15441 |
atcatcggtgacaatgctgttgatccattcatttttcgagaatacattggcgtgaagccatacccagcttctcttaataatttccca |
15355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University