View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8913_low_15 (Length: 376)

Name: NF8913_low_15
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8913_low_15
NF8913_low_15
[»] chr8 (2 HSPs)
chr8 (18-376)||(39745088-39745443)
chr8 (42-124)||(12462605-12462687)
[»] chr1 (3 HSPs)
chr1 (18-376)||(27514259-27514614)
chr1 (18-376)||(9717694-9718049)
chr1 (42-124)||(8189831-8189913)
[»] chr4 (3 HSPs)
chr4 (18-376)||(56390016-56390371)
chr4 (75-172)||(3275761-3275858)
chr4 (75-172)||(28600894-28600991)
[»] chr5 (1 HSPs)
chr5 (21-308)||(32203375-32203663)
[»] chr2 (2 HSPs)
chr2 (21-308)||(40453984-40454272)
chr2 (42-124)||(40092248-40092330)
[»] chr7 (1 HSPs)
chr7 (42-124)||(4245808-4245890)
[»] chr3 (1 HSPs)
chr3 (39-103)||(50060890-50060954)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 39745443 - 39745088
Alignment:
Q  18 accccaagtgccatgactctaaactctgcttcaacactagatcttgctactaccggttgttttttactcctccaggttacaagatttcctcctacaaacg 117  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39745443 accccaagtgccatgcctctaaactctgcttcagcactagatcttgctaccaccggttgttttttactcctccaggttacaagatttcctcctacaaacg 39745344  T
Q  118 taaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcagtgtacccttcaacctctaagtttccatgatttgagaat-aaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  39745343 taaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcggtgtacccttcaacctctaagtttccatgatttgagaataaaat 39745244  T
Q  217 tcctttaccaggagtagacttcaaatatctcaaaatcctctcaacaacgtccatatgaggcttgcgtggatcatgcataaattgactaacaaacaacatt 316  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    |||||||||    
T  39745243 tccttttccaggagtagacttcaaatatctcaaaatcctctcaacaacatccatatgaggcttgcgtggatcatgcataaattgact----aacaacatt 39745148  T
Q  317 tactgcataggtaatatcatgacgtgtatgagacaaataaattaattttcccactagcct 376  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39745147 tactgcataggtaatatcaggacgtgtatgagacaaataaattaattttcccactagcct 39745088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 12462687 - 12462605
Alignment:
Q  42 tctgcttcaacactagatcttgctactaccggttgttttttactcctccaggttacaagatttcctcctacaaacgtaaagta 124  Q
    ||||||||  |||| ||||| || |||||  ||||||||||||||||||| ||||| | ||||||||| ||||| || |||||    
T  12462687 tctgcttcggcacttgatctagcaactacttgttgttttttactcctccaagttactaaatttcctcccacaaaagttaagta 12462605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 27514259 - 27514614
Alignment:
Q  18 accccaagtgccatgactctaaactctgcttcaacactagatcttgctactaccggttgttttttactcctccaggttacaagatttcctcctacaaacg 117  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27514259 accccaagtgccatgcctctaaactctgcttcagcactagatcttgctaccaccggttgttttttactcctccaggttacaagatttcctcctacaaacg 27514358  T
Q  118 taaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcagtgtacccttcaacctctaagtttccatgatttgagaat-aaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  27514359 taaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcggtgtacccttcaacctctaagtttccatgatttgagaataaaat 27514458  T
Q  217 tcctttaccaggagtagacttcaaatatctcaaaatcctctcaacaacgtccatatgaggcttgcgtggatcatgcataaattgactaacaaacaacatt 316  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    |||||||||    
T  27514459 tccttttccaggagtagacttcaaatatctcaaaatcctctcaacaacatccatatgaggcttgcgtggatcatgcataaattgact----aacaacatt 27514554  T
Q  317 tactgcataggtaatatcatgacgtgtatgagacaaataaattaattttcccactagcct 376  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27514555 tactgcataggtaatatcaggacgtgtatgagacaaataaattaattttcccactagcct 27514614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 9717694 - 9718049
Alignment:
Q  18 accccaagtgccatgactctaaactctgcttcaacactagatcttgctactaccggttgttttttactcctccaggttacaagatttcctcctacaaacg 117  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  9717694 accccaagtgccatgcctctaaactctgcttcagcactagatcttgctaccaccggttgttttttactcctccaggttacaagatttcctcctacaaaca 9717793  T
Q  118 taaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcagtgtacccttcaacctctaagtttccatgatttgagaat-aaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  9717794 taaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcggtgtacccttcaacctctaagtttccatgatttgagaataaaat 9717893  T
Q  217 tcctttaccaggagtagacttcaaatatctcaaaatcctctcaacaacgtccatatgaggcttgcgtggatcatgcataaattgactaacaaacaacatt 316  Q
    |||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    |||||||||    
T  9717894 tccttttctaggagtagacttcaaatatctcaaaatcctctcaacagcatccatatgaggcttgcgtggatcatgcataaattgact----aacaacatt 9717989  T
Q  317 tactgcataggtaatatcatgacgtgtatgagacaaataaattaattttcccactagcct 376  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9717990 tactgcataggtaatatcaggacgtgtatgagacaaataaattaattttcccactagcct 9718049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 8189831 - 8189913
Alignment:
Q  42 tctgcttcaacactagatcttgctactaccggttgttttttactcctccaggttacaagatttcctcctacaaacgtaaagta 124  Q
    ||||||||  |||| ||||| || |||||  ||||||||||||||||||| ||||| | ||||||||| ||||| || |||||    
T  8189831 tctgcttcggcacttgatctagcaactacttgttgttttttactcctccaagttactaaatttcctcccacaaaagtgaagta 8189913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 56390016 - 56390371
Alignment:
Q  18 accccaagtgccatgactctaaactctgcttcaacactagatcttgctactaccggttgttttttactcctccaggttacaagatttcctcctacaaacg 117  Q
    |||||||||| |||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  56390016 accccaagtgtcatgcctctaaactctgcttcagcactagatcttgttaccaccggttgttttttactcctccaggttacaagatttcctcctacaaatg 56390115  T
Q  118 taaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcagtgtacccttcaacctctaagtttccatgatttgagaat-aaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||    
T  56390116 taaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcggtgtaccctttaacctctaagtttccatgatttgagaataaaat 56390215  T
Q  217 tcctttaccaggagtagacttcaaatatctcaaaatcctctcaacaacgtccatatgaggcttgcgtggatcatgcataaattgactaacaaacaacatt 316  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    |||||||||    
T  56390216 tccttttccaggagtagacttcaaatatctcaaaatcctctcaacaacatccatatgaggcttgcgtggatcatgcataaattgact----aacaacatt 56390311  T
Q  317 tactgcataggtaatatcatgacgtgtatgagacaaataaattaattttcccactagcct 376  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  56390312 tactgcataggtaatatcaggacgtgtatgagacaaataaattaattttcccactagcct 56390371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 3275761 - 3275858
Alignment:
Q  75 tgttttttactcctccaggttacaagatttcctcctacaaacgtaaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatc 172  Q
    |||||||| || ||||| || ||||| || ||||||||||| || |||||||| || ||||| |||||||||| | | || || |||||||| |||||    
T  3275761 tgttttttgcttctccatgtaacaaggttacctcctacaaaggtgaagtaacctgaagtagatcttctatcatctatagatccagcccaatcggcatc 3275858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 28600991 - 28600894
Alignment:
Q  75 tgttttttactcctccaggttacaagatttcctcctacaaacgtaaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatc 172  Q
    |||||||| || ||||| || ||||| || ||||||||||| || |||||||| || ||||| |||||||||| | | || || |||||||| |||||    
T  28600991 tgttttttgcttctccatgtaacaaggttacctcctacaaaggtgaagtaacctgaagtagatcttctatcatctatagatccagcccaatcggcatc 28600894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 21 - 308
Target Start/End: Complemental strand, 32203663 - 32203375
Alignment:
Q  21 ccaagtgccatgactctaaactctgcttcaacactagatcttgctactaccggttgttttttactcctccaggttacaagatttcctcctacaaacgtaa 120  Q
    |||||||||||  ||||||||||| ||||| |||| ||||| |||||||| || || || ||||||||||| |||||||| |||||||||||||| || |    
T  32203663 ccaagtgccatacctctaaactctacttcagcacttgatctagctactactggctgcttcttactcctccaagttacaaggtttcctcctacaaaagtga 32203564  T
Q  121 agtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcagtgtacccttcaacctctaagtttccatgatttgagaataa-attcc 219  Q
    | || || |||||||| |||||||||| |  ||| ||||||||||| ||||| ||||| ||||| |||   ||||  ||||  |||||||| || |||||    
T  32203563 aatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatctgtgtatccttctaccctcaagtgaccattgtttgagaacaatattcc 32203464  T
Q  220 tttaccaggagtagacttcaaatatctcaaaatcctctcaacaacgtccatatgaggcttgcgtggatcatgcataaattgactaacaa 308  Q
    |||||| ||||| || ||||||||||| || |||||||| ||||| |||||||||||||| || |||||||||||||| ||||| ||||    
T  32203463 tttacctggagtggatttcaaatatcttaatatcctctctacaacatccatatgaggcttacgcggatcatgcataaactgactcacaa 32203375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 40453984 - 40454272
Alignment:
Q  21 ccaagtgccatgactctaaactctgcttcaacactagatcttgctactaccggttgttttttactcctccaggttacaagatttcctcctacaaacgtaa 120  Q
    |||||||||||  ||||||||||| ||||| |||| ||||| |||||||| || || || ||||||||||| |||||||| |||||||||||||| || |    
T  40453984 ccaagtgccatacctctaaactcttcttcagcacttgatctagctactactggctgcttcttactcctccaagttacaaggtttcctcctacaaaagtga 40454083  T
Q  121 agtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcagtgtacccttcaacctctaagtttccatgatttgagaataa-attcc 219  Q
    | || || |||||||| |||||||||| |  ||| ||||||||||| ||||| ||||| ||||| |||   ||||  ||||  |||||||| || |||||    
T  40454084 aatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatctgtgtatccttctaccctcaagtgaccattgtttgagaacaatattcc 40454183  T
Q  220 tttaccaggagtagacttcaaatatctcaaaatcctctcaacaacgtccatatgaggcttgcgtggatcatgcataaattgactaacaa 308  Q
    |||||| ||||| || ||||||||||| || |||||||| ||| | |||||||||||||| || |||||||||||||| ||||| ||||    
T  40454184 tttacctggagtggatttcaaatatcttaatatcctctctacatcatccatatgaggcttacgcggatcatgcataaactgactcacaa 40454272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 40092330 - 40092248
Alignment:
Q  42 tctgcttcaacactagatcttgctactaccggttgttttttactcctccaggttacaagatttcctcctacaaacgtaaagta 124  Q
    ||||||||  |||| ||||| || |||||  ||||||||||||||||||| ||||| | ||||||||| ||||| || |||||    
T  40092330 tctgcttcggcacttgatctagcaactacttgttgttttttactcctccaagttactaaatttcctcccacaaaagttaagta 40092248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 4245890 - 4245808
Alignment:
Q  42 tctgcttcaacactagatcttgctactaccggttgttttttactcctccaggttacaagatttcctcctacaaacgtaaagta 124  Q
    ||||||||  |||| ||||| || |||||  ||||||||||||||||||| ||||| | ||||||||| ||||| || |||||    
T  4245890 tctgcttcggcacttgatctagcaactacttgttgttttttactcctccaagttactaaatttcctcccacaaaagttaagta 4245808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 50060954 - 50060890
Alignment:
Q  39 aactctgcttcaacactagatcttgctactaccggttgttttttactcctccaggttacaagatt 103  Q
    |||||||||||| |||||||||| | ||| || | ||||||||||||| |||| || ||||||||    
T  50060954 aactctgcttcagcactagatctagataccacagtttgttttttactcttccaagtcacaagatt 50060890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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