View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8913_low_18 (Length: 367)
Name: NF8913_low_18
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 34142180 - 34141826
Alignment:
| Q |
1 |
tgactaaatttagtgagtacggtctctgttgcgattcaatgtatattcatgcttgtttttgtcatattcgtaatgctaaatataaatannnnnnnatatc |
100 |
Q |
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| T |
34142180 |
tgactaaatttagtgagtacggtctctgttgcgattcaatgtatattcatgcttgtttttgtcatattcgtaatgctaaatataaatatttttt-atatc |
34142082 |
T |
|
| Q |
101 |
aatcaggcatattttgatactagagccaaggccatgctcatgtaaaataatacagaatcaaggnnnnnnnntcagcagcatattgaaaccatactctccg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
34142081 |
aatcaggcatattttgatactagagccaaggccatgctcatgtaaaataatacagaatcgagaaaaaaaaatcagcagcatattgaaaccatactctccg |
34141982 |
T |
|
| Q |
201 |
tctccgttaccattaatgtaattaannnnnnnn-------gacaagattaccattcatgtagttgaagaaacaaataatcttattcaacatcaaattggt |
293 |
Q |
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|||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34141981 |
tctccgttaccattcatgtagttttttttttttttttttggacaagattaccattcatgtagttgaagaaacaaataatcttattcaacatcaaattggt |
34141882 |
T |
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| Q |
294 |
gctatttctaattgttggtactgtggtcaatttcaaattggtgctatagagcgtag |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34141881 |
gctatttctaattgttggtactgtggtcaatttcaaattggtgctatagagtgtag |
34141826 |
T |
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