View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8913_low_2 (Length: 695)
Name: NF8913_low_2
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_2 |
 | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 553; Significance: 0; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 105 - 681
Target Start/End: Complemental strand, 1453989 - 1453413
Alignment:
| Q |
105 |
cgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgcttacgctaatgactctttgga |
204 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1453989 |
cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttgga |
1453890 |
T |
|
| Q |
205 |
tatctgggttatgaagtattatggaaataaagactcttggaataaattgttcgccattccgttcatggaactttgttacaatggtattggttttttcagt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1453889 |
tatctgggttatgaagtattatggaaataaagactcttggaataaattgttcgccattccgttcatggaactttgttacaatggtattggttttttcagt |
1453790 |
T |
|
| Q |
305 |
ctgctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtactctaaagattcctaaga |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1453789 |
ctgctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtaccctaaagattcctaaga |
1453690 |
T |
|
| Q |
405 |
ttcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcacatcaccttaaccttattgctttcctatgttgactctcaaatattc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1453689 |
ttcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcacatcaccttaaccttattgctttcctatgttgactctcgaatattc |
1453590 |
T |
|
| Q |
505 |
tccaaatacgttttcttctgttattctgtttatttatgttgtttctagtttttgatgctgactttatagcttcatgttaattcatggtattaactttata |
604 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1453589 |
tccaaatacgttttcttctgttattctatttatttatgttgtttctagtttttgatgctgactttatagcttcatgttaattcatggtattaactttata |
1453490 |
T |
|
| Q |
605 |
tttttctatttgatgatacattactcactttctgttactttatagaattaatccttaattctgagtttatagttatt |
681 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1453489 |
tttttctatttgatgatacattactcactttctgttactttatagaattaatccttaattctgagtttattgttatt |
1453413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 105 - 681
Target Start/End: Complemental strand, 1465681 - 1465105
Alignment:
| Q |
105 |
cgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgcttacgctaatgactctttgga |
204 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1465681 |
cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttgga |
1465582 |
T |
|
| Q |
205 |
tatctgggttatgaagtattatggaaataaagactcttggaataaattgttcgccattccgttcatggaactttgttacaatggtattggttttttcagt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1465581 |
tatctgggttatgaagtattatggaaataaagactcttggaataaattgttcgccattccgttcatggaactttgttacaatggtattggttttttcagt |
1465482 |
T |
|
| Q |
305 |
ctgctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtactctaaagattcctaaga |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1465481 |
ctgctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtaccctaaagattcctaaga |
1465382 |
T |
|
| Q |
405 |
ttcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcacatcaccttaaccttattgctttcctatgttgactctcaaatattc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1465381 |
ttcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcacatcaccttaaccttattgctttcctatgttgactctcgaatattc |
1465282 |
T |
|
| Q |
505 |
tccaaatacgttttcttctgttattctgtttatttatgttgtttctagtttttgatgctgactttatagcttcatgttaattcatggtattaactttata |
604 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1465281 |
tccaaatacgttttcttctgttattctatttatttatgttgtttctagtttttgatgctgactttatagcttcatgttaattcatggtattaactttata |
1465182 |
T |
|
| Q |
605 |
tttttctatttgatgatacattactcactttctgttactttatagaattaatccttaattctgagtttatagttatt |
681 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1465181 |
tttttctatttgatgatacattactcactttctgttactttatagaattaatccttaattctgagtttattgttatt |
1465105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 53 - 255
Target Start/End: Complemental strand, 1459746 - 1459540
Alignment:
| Q |
53 |
ctcttcatgggttattctttctctcga----ggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagc |
148 |
Q |
| |
|
||||||| |||| ||||||||||| || ||||||||||||||||||||||||| |||||| ||| |||| ||||||| |||||||| |||| ||| |
|
|
| T |
1459746 |
ctcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagc |
1459647 |
T |
|
| Q |
149 |
ttgggagtatctagggattgcttatgcatccttgcttacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaata |
248 |
Q |
| |
|
||||| || | |||||||| ||||||| |||||||| | | || | ||||||||| ||||||||||| ||| |||||||||||| ||||||| || |
|
|
| T |
1459646 |
ttgggggtttatagggattacttatgcgtccttgctcatacaaaatcttttttggatatttgggttatgaaagattttggaaataaagaatcttggacta |
1459547 |
T |
|
| Q |
249 |
aattgtt |
255 |
Q |
| |
|
||||||| |
|
|
| T |
1459546 |
aattgtt |
1459540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 79 - 255
Target Start/End: Complemental strand, 1471098 - 1470922
Alignment:
| Q |
79 |
aggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatc |
178 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||| || | ||||||| |||||| | |||| |||||||| || |||||||||| |||||||||| |
|
|
| T |
1471098 |
aggaaacgagtcttatcaagagattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttctagggattacttatgcatc |
1470999 |
T |
|
| Q |
179 |
cttgcttacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgtt |
255 |
Q |
| |
|
|||||| | | || | ||||||||| ||||||||||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
1470998 |
cttgctcataccaaatcttttttggatatttgggttatgaaagattatggaaataaagattcttggtctaaattgtt |
1470922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 56 - 256
Target Start/End: Complemental strand, 370987 - 370783
Alignment:
| Q |
56 |
ttcatgggttattctttctctcga----ggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttg |
151 |
Q |
| |
|
||||||||| ||||||||||| || | ||| |||| ||||||||||||||||||||| |||| |||||||||||| |||||| ||| || |||| |
|
|
| T |
370987 |
ttcatgggtcattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttg |
370888 |
T |
|
| Q |
152 |
ggagtatctagggattgcttatgcatccttgcttacgctaatgactctt-tggatatctgggttatgaagtattatggaaataaagactcttggaataaa |
250 |
Q |
| |
|
| || ||||||||||||||||||||||||||| | |||| ||| || ||| | |||||||||||| |||||||||||||||| ||||||| |||| |
|
|
| T |
370887 |
gaggtttctagggattgcttatgcatccttgctcagactaa-aacttttatgggcgtttgggttatgaagaattatggaaataaagattcttggactaaa |
370789 |
T |
|
| Q |
251 |
ttgttc |
256 |
Q |
| |
|
|||||| |
|
|
| T |
370788 |
ttgttc |
370783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 305 - 472
Target Start/End: Complemental strand, 1459478 - 1459317
Alignment:
| Q |
305 |
ctgctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtactctaaagattcctaaga |
404 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||| || | || || || || || ||||||||||||||||||||||||||| | |||||||||| ||| |
|
|
| T |
1459478 |
ctgctttatatttctgaggaagatgaccaagtggtcctagatttctataataagatatatgtttacaattacaagaatcgtatttcaaagattcctgaga |
1459379 |
T |
|
| Q |
405 |
ttcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcacatcaccttaacct |
472 |
Q |
| |
|
|||| || || || |||||||| ||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
1459378 |
ttcatgg------ttttactaggtttacttctaatgtctacgcagagagtctcatatcaccttgacct |
1459317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 357 - 472
Target Start/End: Complemental strand, 370685 - 370570
Alignment:
| Q |
357 |
aggtatatgtttacaattacaagaatcgtactctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtct |
456 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| |||||| |||||| |||||| ||| | || | |||||||||||||||||||||||| |
|
|
| T |
370685 |
aggtatatgtttacaattacaagaatcacactacaaagactcctaacattcaatgcctcctttcaacttcattcatctctaatgtctacgttgagagtct |
370586 |
T |
|
| Q |
457 |
cacatcaccttaacct |
472 |
Q |
| |
|
|| |||||||| |||| |
|
|
| T |
370585 |
catatcaccttgacct |
370570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 1441999 - 1441935
Alignment:
| Q |
357 |
aggtatatgtttacaattacaagaatcgtactctaaagattcctaagattcaaggcctcccttct |
421 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
1441999 |
aggtatatgcttataattacaagaatggtactgtaaagattcataatattcaaggcctcccttct |
1441935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 256
Target Start/End: Original strand, 176216 - 176387
Alignment:
| Q |
79 |
aggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatc |
178 |
Q |
| |
|
|||||| ||||| |||| |||||||| |||||||||| ||||||| |||||||| |||| |||||||| || |||||||||||| ||||| || |
|
|
| T |
176216 |
aggaaatgagtcgtatcgggagatttcccagcccgattatggtctac------ctctgcataacttcagcttgggggtttctagggattgcctatgcgtc |
176309 |
T |
|
| Q |
179 |
cttgcttacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgttc |
256 |
Q |
| |
|
|||||| || | | | ||||||||| ||| |||||| |||||||||||||||| ||||||| |||||||||| |
|
|
| T |
176310 |
cttgctcacaccgaaacttttttggatatttggcgtatgaatgattatggaaataaagattcttggactaaattgttc |
176387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 417
Target Start/End: Original strand, 176438 - 176548
Alignment:
| Q |
307 |
gctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtactctaaagattcctaagatt |
406 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| | |||| | || |||||||||||||||||||||||| | || | |||||| ||| |||||| |
|
|
| T |
176438 |
gctttatatttctgaggaggaccaccaagtgttcgtgtacttcatcaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagatt |
176537 |
T |
|
| Q |
407 |
caaggcctccc |
417 |
Q |
| |
|
||||||||||| |
|
|
| T |
176538 |
caaggcctccc |
176548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 256
Target Start/End: Complemental strand, 7564956 - 7564749
Alignment:
| Q |
53 |
ctcttcatgggttattctttctctcga----ggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagc |
148 |
Q |
| |
|
|||||||||||| |||||||| || || || |||||||||||||||||||||| |||||| |||| |||| | | | ||||| | |||| ||| |
|
|
| T |
7564956 |
ctcttcatgggtcattctttcccttgatttaggtaacgagtcttatcaagagattttgcagccagattatggtgttcaccaacgtctgcgttactttagc |
7564857 |
T |
|
| Q |
149 |
ttgggagtatctagggattgcttatgcatccttgcttacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaata |
248 |
Q |
| |
|
|| || || | ||||||||||||||| |||||||| || ||| | |||| |||| |||||||||||| |||||||||| || || ||||||| || |
|
|
| T |
7564856 |
ttaggggtttgtagggattgcttatgggtccttgctcacactacaacttttttgaatatttgggttatgaaggattatggaaacaaggattcttggacta |
7564757 |
T |
|
| Q |
249 |
aattgttc |
256 |
Q |
| |
|
|||||||| |
|
|
| T |
7564756 |
aattgttc |
7564749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 1442163 - 1442106
Alignment:
| Q |
199 |
tttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgttc |
256 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
1442163 |
tttggatacatgggttatgaaggattatggaattaaagattcttggactaaattgttc |
1442106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 507
Target Start/End: Original strand, 176599 - 176668
Alignment:
| Q |
438 |
atgtctacgttgagagtctcacatcaccttaaccttattgctttcctatgttgactctcaaatattctcc |
507 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||| ||||||| || || || |||||||| ||||||| |
|
|
| T |
176599 |
atgtctatgttgagagtctcatatcaccttgacctacttgctttgctctgctggctctcaaagattctcc |
176668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 664
Target Start/End: Complemental strand, 1441746 - 1441673
Alignment:
| Q |
592 |
tattaactttatatttttctattt-gatgatacattactcactttctgttactttatagaattaatccttaatt |
664 |
Q |
| |
|
|||||||| | ||||| |||||| |||||||| ||||||| | ||||||| ||||| |||||||||||||||| |
|
|
| T |
1441746 |
tattaactctttatttcactatttcgatgatacgttactcagtgtctgttagtttatggaattaatccttaatt |
1441673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 1470798 - 1470750
Alignment:
| Q |
364 |
tgtttacaattacaagaatcgtactctaaagattcctaagattcaaggc |
412 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||| |||||||||| |
|
|
| T |
1470798 |
tgtttacaattacaaggatggtactgtaaagattcctgggattcaaggc |
1470750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 56 - 342
Target Start/End: Original strand, 3926908 - 3927198
Alignment:
| Q |
56 |
ttcatgggttattctttctctcga----ggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttg |
151 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||| |||||||||||||| | ||||||||||||||| |||||| | | ||| ||| | ||| |
|
|
| T |
3926908 |
ttcatgggtcattctttctcttgatttaggaaacgagtcctatcaagagatttcacggcccgattttggtcttgatgatccggttcatatcttcacctta |
3927007 |
T |
|
| Q |
152 |
ggagtatctagggattgcttatgcatccttgcttacgctaatgactct-ttggatatctgggttatgaagtattatggaaataaagactcttggaataaa |
250 |
Q |
| |
|
|| || |||| ||||||||| || |||||| |||| || | ||| | |||| ||| |||||||||||| |||||||||||||| | ||||||| |||| |
|
|
| T |
3927008 |
ggggtttctaaggattgcttgtgtgtccttgtttacactga-aactttgttgggtatttgggttatgaaggattatggaaataaaaattcttggactaaa |
3927106 |
T |
|
| Q |
251 |
ttgttcgccattccgttcatggaactttgttacaatggtattggttttttcagtctgctttatatttccgaggaggatggccaagtgttctt |
342 |
Q |
| |
|
|||||||| |||||| | || || |||| ||||| |||||||| || ||||| ||||||||| |||||||||| |||||||||||| |
|
|
| T |
3927107 |
ttgttcgcagttccgtacgccaaagttggttatcatggttttggttttgtcgatctgcattatatttctgaggaggatgaccaagtgttctt |
3927198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 255
Target Start/End: Original strand, 55419658 - 55419834
Alignment:
| Q |
79 |
aggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatc |
178 |
Q |
| |
|
|||||| ||||||||||||| |||| |||| ||||| | |||||||||||| | || |||||| |||| | || || | ||||||||||||| || |
|
|
| T |
55419658 |
aggaaatgagtcttatcaagtgattccgcatcccgagtatggtctagatgaaccgttggtctacttgaacttgagtgtttccaaggattgcttatgcgtc |
55419757 |
T |
|
| Q |
179 |
cttgcttacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgtt |
255 |
Q |
| |
|
||||| || | ||| | ||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
55419758 |
gttgctcacaccaattcttttttggatatctggcttatgaaggtttatggaaataaagattcttggactaaattgtt |
55419834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 474
Target Start/End: Original strand, 55419942 - 55420050
Alignment:
| Q |
366 |
tttacaattacaagaatcgtactctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtctcacatcacc |
465 |
Q |
| |
|
|||||||||| |||||| ||| | ||||||||||| | ||||||||||||||||| || ||| | ||||| ||||||| |||| ||||| | |||||| |
|
|
| T |
55419942 |
tttacaattataagaatggtaatgtaaagattcctgacattcaaggcctcccttcaaattcgttcaactctattgtctactttgaaagtctgatatcacc |
55420041 |
T |
|
| Q |
466 |
ttaacctta |
474 |
Q |
| |
|
|| |||||| |
|
|
| T |
55420042 |
ttgacctta |
55420050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 2456255 - 2456300
Alignment:
| Q |
209 |
tgggttatgaagtattatggaaataaagactcttggaataaattgt |
254 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| |||||||| |
|
|
| T |
2456255 |
tgggttatgaaggaatatggaaataaagactcttggactaaattgt |
2456300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 1438003 - 1438046
Alignment:
| Q |
211 |
ggttatgaagtattatggaaataaagactcttggaataaattgt |
254 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| |||||||| |
|
|
| T |
1438003 |
ggttatgaaggaatatggaaataaagactcttggattaaattgt |
1438046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 3754606 - 3754652
Alignment:
| Q |
209 |
tgggttatgaagtattatggaaataaagactcttggaataaattgtt |
255 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||| ||||||||| |
|
|
| T |
3754606 |
tgggttatgaaggaatatggaaataaagagtcttggactaaattgtt |
3754652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 771544 - 771499
Alignment:
| Q |
209 |
tgggttatgaagtattatggaaataaagactcttggaataaattgt |
254 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||||||| |||||||| |
|
|
| T |
771544 |
tgggttatgaaggaatatggaaatacagactcttggactaaattgt |
771499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 89143 - 89194
Alignment:
| Q |
203 |
gatatctgggttatgaagtattatggaaataaagactcttggaataaattgt |
254 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||| ||||||| |||||||| |
|
|
| T |
89143 |
gatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgt |
89194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 11081819 - 11081865
Alignment:
| Q |
209 |
tgggttatgaagtattatggaaataaagactcttggaataaattgtt |
255 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||| ||||||||| |
|
|
| T |
11081819 |
tgggttatgaaggagtatggaaataaagagtcttggactaaattgtt |
11081865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 32370 - 32330
Alignment:
| Q |
213 |
ttatgaagtattatggaaataaagactcttggaataaattg |
253 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| ||||||| |
|
|
| T |
32370 |
ttatgaaggaatatggaaataaagactcttggattaaattg |
32330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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