View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8913_low_20 (Length: 361)
Name: NF8913_low_20
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 26616890 - 26616606
Alignment:
| Q |
15 |
acatcatgagagtaaattaatagtatatatagtacatgaaataaaaataaatgattgttctgtgagctccaaaatcagacaagaataggaaagtttaaaa |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26616890 |
acatcatgagagtaaattaatagtatatatagtacatgaaattaaaataaatgattgttctgtgagctccaaaatcagacaagaataggaaagtttaaaa |
26616791 |
T |
|
| Q |
115 |
gcggaatatagtaatagtagaaatgttagtatgctactttcttcatcatttgtgtttaaacattaaaaataccccaactttcctttttaaaaacaagtaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26616790 |
gcggaatatagtaatagtagaaatgttagtatgctactttcttcatcatttgtgtttaaacattaaaaataccccaactttcctttttaaaaacaagtaa |
26616691 |
T |
|
| Q |
215 |
agatgaaggtaattacgtaaatcacgatttaatttatgttaatannnnnnnnnatttcaacttttctctcttcctcttctcgtcc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26616690 |
agatgaaggtaattacgtaaatcacgatttaatttatgttaatatttttttttatttcaacttttctctcttcctcttctcgtcc |
26616606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 26722818 - 26722534
Alignment:
| Q |
15 |
acatcatgagagtaaattaatagtatatatagtacatgaaataaaaataaatgattgttctgtgagctccaaaatcagacaagaataggaaagtttaaaa |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722818 |
acatcatgagagtaaattaatagtatatatagtacatgaaattaaaataaatgattgttctgtgagctccaaaatcagacaagaataggaaagtttaaaa |
26722719 |
T |
|
| Q |
115 |
gcggaatatagtaatagtagaaatgttagtatgctactttcttcatcatttgtgtttaaacattaaaaataccccaactttcctttttaaaaacaagtaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722718 |
gcggaatatagtaatagtagaaatgttagtatgctactttcttcatcatttgtgtttaaacattaaaaataccccaactttcctttttaaaaacaagtaa |
26722619 |
T |
|
| Q |
215 |
agatgaaggtaattacgtaaatcacgatttaatttatgttaatannnnnnnnnatttcaacttttctctcttcctcttctcgtcc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26722618 |
agatgaaggtaattacgtaaatcacgatttaatttatgttaatatttttttttatttcaacttttctctcttcctcttctcgtcc |
26722534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 27668866 - 27668995
Alignment:
| Q |
45 |
agtacatgaaataaaaataaatga--ttgttctgtgag-ctccaaaatcagacaagaataggaaagtttaaaagcggaata-tagtaatagtagaaatgt |
140 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||||||| || | |||| ||||| |||||||| ||||||||| |
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| T |
27668866 |
agtatatgaaataaaaataaatgtagttgttctgtgggactccaaaatcagacaagaataggaaatttaagaagcagaataatagtaataatagaaatgt |
27668965 |
T |
|
| Q |
141 |
tagtatgctactttcttcatcatttgtgtt |
170 |
Q |
| |
|
|||||| ||||| |||||||||||| |||| |
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| T |
27668966 |
tagtatcctactatcttcatcatttatgtt |
27668995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 26660876 - 26660723
Alignment:
| Q |
18 |
tcatgagagtaaattaatagtatatatagtacatgaaataaaaataaatga--ttgttctgtgagctccaaaatcagacaagaataggaaagtttaaaag |
115 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||||||||||||||| ||||| |||| |||||||||||||||| ||||||||| || | ||| |
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| T |
26660876 |
tcatgagagtaaaataacagtatatata-------aaataaaaataaatgaagttgttttgtggactccaaaatcagacaaaaataggaaatttaagaag |
26660784 |
T |
|
| Q |
116 |
cggaata------tagtaatagtagaaatgttagtatgctactttcttcatcatttgtgtt |
170 |
Q |
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| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26660783 |
cagaataatagtatagtaatattagaaatgttagtatgctactttcttcatcatttgtgtt |
26660723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 26766847 - 26766694
Alignment:
| Q |
18 |
tcatgagagtaaattaatagtatatatagtacatgaaataaaaataaatga--ttgttctgtgagctccaaaatcagacaagaataggaaagtttaaaag |
115 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||||||||||||||| ||||| |||| |||||||||||||||| ||||||||| || | ||| |
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| T |
26766847 |
tcatgagagtaaaataacagtatatata-------aaataaaaataaatgaagttgttttgtggactccaaaatcagacaaaaataggaaatttaagaag |
26766755 |
T |
|
| Q |
116 |
cggaata------tagtaatagtagaaatgttagtatgctactttcttcatcatttgtgtt |
170 |
Q |
| |
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| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26766754 |
cagaataatagtatagtaatattagaaatgttagtatgctactttcttcatcatttgtgtt |
26766694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 26810630 - 26810582
Alignment:
| Q |
122 |
atagtaatagtagaaatgttagtatgctactttcttcatcatttgtgtt |
170 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||| ||||| |
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|
| T |
26810630 |
atagtaatagtagaaatgttagtatgccactaccttcatcattcgtgtt |
26810582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 18823918 - 18823839
Alignment:
| Q |
179 |
aaaaataccccaactttcctttttaaaaacaagtaaagatgaaggtaattacgtaaatcacgatttaatttatgttaata |
258 |
Q |
| |
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||||||||||||||||||||||| |||||||| |||| | | ||||| ||| ||||||| ||||||||||||||||||| |
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| T |
18823918 |
aaaaataccccaactttccttttgaaaaacaattaaaaagaagggtaaatacataaatcatgatttaatttatgttaata |
18823839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 18823239 - 18823311
Alignment:
| Q |
184 |
taccccaactttcctttttaaaaacaagtaaagatgaagg-taattacgtaaatcacgatttaatttatgtta |
255 |
Q |
| |
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||||||| |||||||||| ||||||| || ||| ||||| ||| || |||||||| |||||||||||||||| |
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| T |
18823239 |
taccccagctttccttttggaaaacaattagagaagaagggtaaatatgtaaatcatgatttaatttatgtta |
18823311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 18343355 - 18343275
Alignment:
| Q |
179 |
aaaaataccccaactttcctttttaaaaacaagtaaagatgaa-ggtaattacgtaaatcacgatttaatttatgttaata |
258 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | ||||| || || || |||||||| | |||||||| |||||||| |
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| T |
18343355 |
aaaaacaccccaactttcctttttaaaaacaagtagaaatgaagggcaaatatgtaaatcatggtttaatttgtgttaata |
18343275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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