View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8913_low_21 (Length: 360)
Name: NF8913_low_21
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 35098229 - 35098573
Alignment:
| Q |
1 |
gttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgttattatgttgcttaa |
100 |
Q |
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| T |
35098229 |
gttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgttattatgttgcttaa |
35098328 |
T |
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| Q |
101 |
aaattatttgcgtccttgagagtgttggttgtaatgcttaccttttgtgtgtgatgtgggt----gtgagttatcatgtcatatgtgaaatgttgctgaa |
196 |
Q |
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| T |
35098329 |
aaattattcgcgtccttcagagtgttggttgtaatgcttaccttttgtgtgtgatgtgggtgtgagtgagttatcatgtcatatgtgaaatgttgctgaa |
35098428 |
T |
|
| Q |
197 |
taaataaaattattaattctccaatttttccttcaagttcactggagtattgattcttttgcaatccttcataatttcccttgtgtatttcatttggcat |
296 |
Q |
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| T |
35098429 |
taaat-aaattattaattctccaatttttccttcaagttcactggagtattgattcttttgcaatccttcataatttcccttgtgtatttcatttggcat |
35098527 |
T |
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| Q |
297 |
attaagactcatttgttatcttgcctaacttccattcctagacaac |
342 |
Q |
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| T |
35098528 |
attaagactcatttgttatcttgcctaacttccattcctagacaac |
35098573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35097940 - 35098034
Alignment:
| Q |
1 |
gttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgttattatgttg |
95 |
Q |
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| T |
35097940 |
gttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgttattatgttg |
35098034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 35072742 - 35072678
Alignment:
| Q |
1 |
gttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaac |
65 |
Q |
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| T |
35072742 |
gttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggttgaac |
35072678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 36296512 - 36296449
Alignment:
| Q |
4 |
actgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaactt |
67 |
Q |
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| T |
36296512 |
actgttccaaaagaagaagttaagaaacctgatgttaagtctattgagatctctggttgaactt |
36296449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 35107133 - 35107183
Alignment:
| Q |
16 |
gaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaact |
66 |
Q |
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| T |
35107133 |
gaagagatcaagaagcctgaagtcaaagccattgaaatctctggttaaact |
35107183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24014241 - 24014177
Alignment:
| Q |
1 |
gttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaac |
65 |
Q |
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| T |
24014241 |
gttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggttgaac |
24014177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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