View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8913_low_23 (Length: 343)
Name: NF8913_low_23
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 2 - 337
Target Start/End: Original strand, 8647044 - 8647379
Alignment:
| Q |
2 |
atatatgtatatatacgtgccttcacaattaatcaaatggtcagttaacacctattccctaacatccaatcatttcgataacaacacactaatactagta |
101 |
Q |
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| T |
8647044 |
atatatgtatatatatgtgccttcacaattaatcaaatggtcagttaacacctattccctaacatccaatcatttcgataacaacacactaatactagta |
8647143 |
T |
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| Q |
102 |
agtaacaacacaaataagaatggaagataaagataactagtcatagaatggcatacttataaaaaattaagtaccattaagaatagtttccaattcatct |
201 |
Q |
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| T |
8647144 |
agtaacaacacaaataagaatggaagataaagataactagtcatagaatggcatacttataaaaaattaagtaccattaagaatagtttccaattcatct |
8647243 |
T |
|
| Q |
202 |
tatgaaattcacatttaatttaataatcatatggctatccagaagggtatgttcatatccaaatgtttttaaacttcgaatcatggaccaataaaattga |
301 |
Q |
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| T |
8647244 |
catgaaattcacatttaatttaataatcatatggctatccagaagggtatgttcatatccaaatgtttttaaacttcgaatcatggaccaataaaattga |
8647343 |
T |
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| Q |
302 |
ctatgtactaaataaattagataaattaacaccaaa |
337 |
Q |
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| T |
8647344 |
ctatgtactaaataaattagataaattaacaccaaa |
8647379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 112 - 320
Target Start/End: Complemental strand, 30607412 - 30607205
Alignment:
| Q |
112 |
caaataagaatggaagataaagataactagtcatagaatggcatacttataaaaaattaagtaccattaagaatagtttccaattcatcttatgaaattc |
211 |
Q |
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| T |
30607412 |
caaataagaatggaagataaagataactagtcatagaatgacatacttatcaataattaagtaccattaataatattttccaattcatctcatgaaattc |
30607313 |
T |
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| Q |
212 |
acatttaatttaataatcatatggctatccagaagggtatgttcatatccaaatgtttttaaacttcgaatcatggaccaataaaattgactatgtacta |
311 |
Q |
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| T |
30607312 |
acatttaatttaataatcaaatggctatcaaaaaggg-atgttcatatccaaatgtttttaaacttcgagtcatggaccaataaaattgactatgtacta |
30607214 |
T |
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| Q |
312 |
aataaatta |
320 |
Q |
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| T |
30607213 |
aacaaatta |
30607205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 29862985 - 29862919
Alignment:
| Q |
46 |
ttaacacctattccctaacatccaatcatttcgataacaacacactaatactagtaagtaacaacac |
112 |
Q |
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| T |
29862985 |
ttaacacctattgcctaacaaccaatcatctcaataacatcacactattactagcaagtaacaacac |
29862919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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