View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8913_low_25 (Length: 335)
Name: NF8913_low_25
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 45549350 - 45549049
Alignment:
| Q |
18 |
attcaagaccagtgaagttgcataccataaaagaaaaacaattggtgagtataactaactaaacatggatgaatggaaacaacttgagttctagatttta |
117 |
Q |
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| T |
45549350 |
attcaagaccagtgaagttgcataccataaaagaaaaacaattggtgagtataactaactaaacatggatgaatggaaacaacttgagttctagatttta |
45549251 |
T |
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| Q |
118 |
cctagtttgtttaatatcacaggagttcaggaaaacagaatgggtgtgaaacaacaaaatcaaaagatgagcatccaacaaccactaacagaaagtgaaa |
217 |
Q |
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| T |
45549250 |
cctagtttgtttaatatcacaggagttcaggaaggcagaatgggtgtgaaacaacaaaatcaaaatatgagcatccaacaaccactaacagaaagtgaaa |
45549151 |
T |
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| Q |
218 |
accacctcaagtggattttggtcacgagtcaattattcgtcaacactgcagaagcacttttcagactaaacatcccgtttggtattcttcaaggtaatca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45549150 |
accacctcaagtggattttggtcacgagtcaattattcgtcaacactgcagaagcacttttcagactaaacatcccgttcggtattcttcaaggtaatca |
45549051 |
T |
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| Q |
318 |
tc |
319 |
Q |
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|| |
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| T |
45549050 |
tc |
45549049 |
T |
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