View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8913_low_26 (Length: 326)
Name: NF8913_low_26
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 47438436 - 47438292
Alignment:
| Q |
1 |
tcttcttttgcgatcttaataattcttattttcttcaattcgacatatatagatagactacttttcctacgtggaaacctataatgccatgaccatgagg |
100 |
Q |
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| T |
47438436 |
tcttcttttgcgatcttaataattcttattttcttcaatccgacatata--gatagactacttttcctacgtggaaacctataatgcc------atgagg |
47438345 |
T |
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| Q |
101 |
catatgtgtgacatcatggttatgactactaaaattttagtattaaatcccag |
153 |
Q |
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| T |
47438344 |
catatgtgtgacatcatggttatgactgctaaaattttagtattaaatcccag |
47438292 |
T |
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Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 47438235 - 47438167
Alignment:
| Q |
162 |
tcatatttcaaaatttgttttagacctctaaattattattttcgcatattttcaatcttctttagtgtc |
230 |
Q |
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| T |
47438235 |
tcatatttcaaaatttgttttagatctttaaattattattttcgcatattgtcaatcttctttagtgtc |
47438167 |
T |
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