View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8913_low_27 (Length: 323)

Name: NF8913_low_27
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8913_low_27
NF8913_low_27
[»] chr7 (4 HSPs)
chr7 (89-315)||(35368624-35368850)
chr7 (19-74)||(1469104-1469159)
chr7 (18-64)||(38864599-38864645)
chr7 (24-68)||(39145811-39145855)
[»] chr1 (7 HSPs)
chr1 (21-68)||(1138573-1138620)
chr1 (21-67)||(24216973-24217019)
chr1 (24-69)||(46607803-46607848)
chr1 (23-67)||(1486415-1486459)
chr1 (24-68)||(18533883-18533927)
chr1 (16-64)||(31162748-31162796)
chr1 (24-68)||(47091684-47091728)
[»] chr6 (2 HSPs)
chr6 (24-68)||(28672061-28672105)
chr6 (21-66)||(8479308-8479353)
[»] chr5 (2 HSPs)
chr5 (24-68)||(1827689-1827733)
chr5 (21-71)||(8780469-8780519)
[»] chr3 (7 HSPs)
chr3 (24-68)||(18177046-18177090)
chr3 (21-68)||(4252552-4252599)
chr3 (24-73)||(21362932-21362981)
chr3 (24-68)||(7470374-7470418)
chr3 (24-68)||(48977382-48977426)
chr3 (21-65)||(50731389-50731433)
chr3 (21-65)||(50781421-50781465)
[»] chr4 (2 HSPs)
chr4 (22-64)||(41085024-41085066)
chr4 (24-68)||(52983613-52983657)
[»] scaffold0328 (1 HSPs)
scaffold0328 (24-72)||(14981-15029)
[»] scaffold0068 (1 HSPs)
scaffold0068 (24-68)||(41803-41847)
[»] chr8 (1 HSPs)
chr8 (24-68)||(42643277-42643321)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 89 - 315
Target Start/End: Original strand, 35368624 - 35368850
Alignment:
Q  89 acttggatgatattttgcaagtgggcgccgttcgaagatattatgtatacaatgttttctgagaggatcatatatatacaaacgttgtttcctgcatatc 188  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35368624 acttggatgatattttgcaagtgggcgcggttcgaagatattatgtatacaatgttttctgagaggatcatatatatacaaacgttgtttcctgcatatc 35368723  T
Q  189 aatattcaatagcattgaatgatatatatagcagagtagcagaaatctggtttccacctctggaccagattgcatttagttgatgaaattaaccgtacat 288  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35368724 aatattcaatagcattgaatgatatatataacagagtagcagaaatctggtttccacctctggaccagattgcatttagttgatgaaattaaccgtacat 35368823  T
Q  289 cttactattcacgagactcaaccacca 315  Q
    |||||||||||||||||||||||||||    
T  35368824 cttactattcacgagactcaaccacca 35368850  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 1469159 - 1469104
Alignment:
Q  19 aacacactccaagatctcatgtcaaccactaggtcaacgccaaatgggtttatata 74  Q
    |||| |||||||||| ||| ||||||||||||| |||| ||||||| |||||||||    
T  1469159 aacaaactccaagatttcaagtcaaccactaggccaaccccaaatgagtttatata 1469104  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 38864599 - 38864645
Alignment:
Q  18 aaacacactccaagatctcatgtcaaccactaggtcaacgccaaatg 64  Q
    ||||| |||| ||||||||| |||||||||||||||||| |||||||    
T  38864599 aaacaaactcaaagatctcaagtcaaccactaggtcaaccccaaatg 38864645  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 39145811 - 39145855
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggtt 68  Q
    ||||||||||| || ||||||||||||||||||  ||||||||||    
T  39145811 actccaagatcccaagtcaaccactaggtcaacctcaaatgggtt 39145855  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 1138620 - 1138573
Alignment:
Q  21 cacactccaagatctcatgtcaaccactaggtcaacgccaaatgggtt 68  Q
    ||||||||||||||||| | |||||||||||||||| |||||||||||    
T  1138620 cacactccaagatctcaagccaaccactaggtcaaccccaaatgggtt 1138573  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 24217019 - 24216973
Alignment:
Q  21 cacactccaagatctcatgtcaaccactaggtcaacgccaaatgggt 67  Q
    |||||||||||||| || |||||||||||||||||| ||||||||||    
T  24217019 cacactccaagatcccaagtcaaccactaggtcaaccccaaatgggt 24216973  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 46607848 - 46607803
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggttt 69  Q
    ||||||||||| || ||||||||||||| |||| ||||||||||||    
T  46607848 actccaagatcccaagtcaaccactaggccaaccccaaatgggttt 46607803  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 1486459 - 1486415
Alignment:
Q  23 cactccaagatctcatgtcaaccactaggtcaacgccaaatgggt 67  Q
    |||||||||||| || | |||||||||||||||| ||||||||||    
T  1486459 cactccaagatcccaagccaaccactaggtcaaccccaaatgggt 1486415  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 18533883 - 18533927
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggtt 68  Q
    |||| ||||||||| ||||||||||| |||||| |||||||||||    
T  18533883 actctaagatctcaagtcaaccactatgtcaaccccaaatgggtt 18533927  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 31162796 - 31162748
Alignment:
Q  16 agaaacacactccaagatctcatgtcaaccactaggtcaacgccaaatg 64  Q
    ||||||||| ||||||||||||   |||||||||||||||| |||||||    
T  31162796 agaaacacaatccaagatctcaaaccaaccactaggtcaaccccaaatg 31162748  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 47091728 - 47091684
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggtt 68  Q
    |||||||||||||| | ||||||||||| |||| |||||||||||    
T  47091728 actccaagatctcaagccaaccactaggccaaccccaaatgggtt 47091684  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 28672105 - 28672061
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggtt 68  Q
    |||||||||||||| ||||||||||||| |||| |||||||||||    
T  28672105 actccaagatctcaagtcaaccactaggccaaccccaaatgggtt 28672061  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 8479353 - 8479308
Alignment:
Q  21 cacactccaagatctcatgtcaaccactaggtcaacgccaaatggg 66  Q
    |||||||||||||| || ||||||||||||| |||| |||||||||    
T  8479353 cacactccaagatcccaagtcaaccactaggccaaccccaaatggg 8479308  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 1827689 - 1827733
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggtt 68  Q
    |||||||||||||| | |||||||||||||||| |||||||||||    
T  1827689 actccaagatctcaagccaaccactaggtcaaccccaaatgggtt 1827733  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 8780519 - 8780469
Alignment:
Q  21 cacactccaagatctcatgtcaaccactaggtcaacgccaaatgggtttat 71  Q
    ||||||||||||||  ||||||||||||||||||||  ||||||| |||||    
T  8780519 cacactccaagatccgatgtcaaccactaggtcaacctcaaatggttttat 8780469  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 18177046 - 18177090
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggtt 68  Q
    |||||||||||||| ||||||||||||| |||| |||||||||||    
T  18177046 actccaagatctcaagtcaaccactaggccaaccccaaatgggtt 18177090  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 4252552 - 4252599
Alignment:
Q  21 cacactccaagatctcatgtcaaccactaggtcaacgccaaatgggtt 68  Q
    ||||||||||||||||| | ||||||||||| |||| |||||||||||    
T  4252552 cacactccaagatctcaagccaaccactaggccaaccccaaatgggtt 4252599  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 21362981 - 21362932
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggtttatat 73  Q
    ||||||||||| || ||||||||||||| |||| ||||||||||| ||||    
T  21362981 actccaagatcccaagtcaaccactaggccaaccccaaatgggttaatat 21362932  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 7470374 - 7470418
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggtt 68  Q
    |||||||||||||| |||||||||||||  ||| |||||||||||    
T  7470374 actccaagatctcaagtcaaccactaggcaaaccccaaatgggtt 7470418  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 48977426 - 48977382
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggtt 68  Q
    ||||||||||| || ||||||||||||| |||| |||||||||||    
T  48977426 actccaagatcccaagtcaaccactaggccaaccccaaatgggtt 48977382  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 50731389 - 50731433
Alignment:
Q  21 cacactccaagatctcatgtcaaccactaggtcaacgccaaatgg 65  Q
    |||||| |||||||||| ||||||||||||||| || ||||||||    
T  50731389 cacacttcaagatctcaagtcaaccactaggtcgacaccaaatgg 50731433  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 50781465 - 50781421
Alignment:
Q  21 cacactccaagatctcatgtcaaccactaggtcaacgccaaatgg 65  Q
    |||||| |||||||||| ||||||||||||||| || ||||||||    
T  50781465 cacacttcaagatctcaagtcaaccactaggtcgacaccaaatgg 50781421  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 41085066 - 41085024
Alignment:
Q  22 acactccaagatctcatgtcaaccactaggtcaacgccaaatg 64  Q
    |||||||||||||||| |||||||||||| ||||| |||||||    
T  41085066 acactccaagatctcaagtcaaccactagatcaaccccaaatg 41085024  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 52983657 - 52983613
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggtt 68  Q
    |||||||||||||| | ||||||||||| |||| |||||||||||    
T  52983657 actccaagatctcaagccaaccactaggccaaccccaaatgggtt 52983613  T

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Target: scaffold0328 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 15029 - 14981
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggtttata 72  Q
    ||||||||||| || | ||||||||||| |||| |||||||||||||||    
T  15029 actccaagatcccaggccaaccactaggccaaccccaaatgggtttata 14981  T

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Target: scaffold0068 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 41803 - 41847
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggtt 68  Q
    ||||||||||| || ||||||||||||| |||| |||||||||||    
T  41803 actccaagatcccaagtcaaccactaggccaaccccaaatgggtt 41847  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 42643277 - 42643321
Alignment:
Q  24 actccaagatctcatgtcaaccactaggtcaacgccaaatgggtt 68  Q
    ||||||||||| || ||||||||||||| |||| |||||||||||    
T  42643277 actccaagatcccaagtcaaccactaggccaaccccaaatgggtt 42643321  T

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