View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8913_low_30 (Length: 320)
Name: NF8913_low_30
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_30 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 58 - 320
Target Start/End: Original strand, 17106731 - 17107002
Alignment:
| Q |
58 |
tgagaattttaaatttgacagtgattaatgtgttcgcaaagacactattttcttgattta----taacttgcccgagagatggttacacaggctgaagga |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | || |
|
|
| T |
17106731 |
tgagaattttaaatttgacagtgattaatgtgttcgcaaacacactattttcttgatttaactttaacttgcccgagagatggttacacaggctgcatga |
17106830 |
T |
|
| Q |
154 |
gtcatttgccgagttaacatttcatctggttatgatcttgtcatcttgtaatgttataacatcatcaaggcttgatgc------atgtgttcgtacgtat |
247 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
17106831 |
gtcatt-gccgagttaacatttcatcttgttatgatcttgtcatcttgtaatgttataacatcatcaaggcttgatgcatctcaatgtgttcttacgtat |
17106929 |
T |
|
| Q |
248 |
gtgtgttcaatttcatttgcttttagaacctttctcataatgcatgtttctgtactcattggtacgtttttat |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17106930 |
gtgtgttcaatttcatttgcttttagaacctttctcataatgcatgtttctgtactcattcgtacgtttttat |
17107002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17106650 - 17106711
Alignment:
| Q |
1 |
ttgatgtatagagaatatgaatatcttatctactataattgtttgttttgaatttattgaga |
62 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17106650 |
ttgatgtatagaaaatatgaatatcttatctactataattgtttgttttgaatttattgaga |
17106711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University