View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8913_low_32 (Length: 313)
Name: NF8913_low_32
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 382779 - 383055
Alignment:
| Q |
17 |
attaagttaatctaaaatatggattaaactagttgattggcattcctaaatgagattatggttttgattaaagaattgaagatgaggatagaatagataa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
382779 |
attaagttaatctaaaatatggattaaactagttggttggcattcctaaatgagattatggttttgattaaagaattgaagatgaggatagaatagataa |
382878 |
T |
|
| Q |
117 |
gatggaagaaattgattaaaggaagattcgaaat----aataaataaaggagagtgggaagggtaaaatagagaaagtgagtttggaatgtgtgttgatc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
382879 |
gatggaagaaattgattaaaggaagattcgaaataataaataaataaaggagagtgggaagggtaaaatagagaaagtgagtttggaatgtgtgttgatc |
382978 |
T |
|
| Q |
213 |
ttacaacacagcttcgcactgaaatataaataaataaacagaacgcagtcagaattcgttcgtactctgtctctctg |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
382979 |
ttacaacacagcttcgcactgaaatataaataaataaacagaacgcagtcagaattcgttcgtactctgtctctctg |
383055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University