View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8913_low_34 (Length: 304)
Name: NF8913_low_34
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 3761033 - 3760750
Alignment:
| Q |
7 |
ttggtgttccttttggtgacgatcaggaaggttgcaaagtaattgtaacttccagagatcttaatgtgttgaccactaactttggtgtaaagaaggttta |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3761033 |
ttggtattccttttggtgacgatcaggaaggttgcaaagtaattgtaacttccagagatcttaatgtgttgaccactaactttggtgtaaagaaggttta |
3760934 |
T |
|
| Q |
107 |
tagacttgaagttttgtccgaggatgagagttggaatttgtttgagaagaggggagagaatgctgttaaagatcttagtattcagccggtagcaatgaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3760933 |
tagacttgaagttttgtccgaggatgagagttggaatttgtttgagaagaggggagagaatgctgttaaagatcttagtattcagccggtagcaatgaaa |
3760834 |
T |
|
| Q |
207 |
gtagccaaaaactgtgctggtttgccacttttgattgttaatttggtggaagcattgaagaacaaggatttatatgcttggaag |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3760833 |
gtagccaaaaactgtgctggtttgccacttttgattgttaatttggtggaggcattgaagaacaaggatttatatgcttggaag |
3760750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University