View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8913_low_35 (Length: 301)
Name: NF8913_low_35
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 55124150 - 55123867
Alignment:
| Q |
1 |
tttaacaacaatacatgcgatggtaaaataaacaagagtgcgaaaagtgaaaagcttatatctattttatgaagaaaaataacttgatccatacgaactt |
100 |
Q |
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| T |
55124150 |
tttaacaacaatacatgcgatggtaaaaaaaacaagagtgcgaaaagtgaaaagcttatatctattctatgaagaaaaataacttgatccatacgaactt |
55124051 |
T |
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| Q |
101 |
gcgaaaatgctgatcacacacaaagaatatgccaaaaccaaactaatatgagagagaagtaacgaag-----ctcatctcatcaattaagcaacaaatat |
195 |
Q |
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| T |
55124050 |
gcgaaaatgctgatcacacacaaagaatatgccaaaaccaaactaatat----gagaagtaacgaagctcatctcatctcatcaattaagcaacaaatat |
55123955 |
T |
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| Q |
196 |
aatttgcaggaggtgggtgagtaaaacaaattaaaaaagaaaagaagcagaatggagtctaagagaaggggtacagaattgaaacagg |
283 |
Q |
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| T |
55123954 |
aatttgcaggaggtgggtgagtaaaacaaattaaaaaagaaaagaaacagaatggagtctaagagaaggggtacagaattgaaacagg |
55123867 |
T |
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