View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8913_low_36 (Length: 296)
Name: NF8913_low_36
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 20608140 - 20608411
Alignment:
| Q |
20 |
acttaactgccaaattgatattcattgtatatacaaagaatgtcgacgtcagttcaaaccatcttgccttaattttaaatgtgattgcggaaaagagtaa |
119 |
Q |
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| T |
20608140 |
acttaactgccatattgatattcattgtatatacaaagaatgtcgacgtccgttcaaaccatcttgccttaattttaaatgtgattgcggaaaagagtaa |
20608239 |
T |
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| Q |
120 |
caattatgagtaaaaacaaatttatgtttacttcaaaccgtataggtagtacttttataatttctttcaaaattatatttatgtttctttgacatttccc |
219 |
Q |
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| T |
20608240 |
caattatgagtaaaaacaaatttatg-ttacttcaaaccgtattggtagtacttttataatttctttcaaaattatatttatgtttctttgacatttccc |
20608338 |
T |
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| Q |
220 |
ttttgttgacaagctcaaaagtatc-ttattatacaataaaagtactat----tatactcactgtagaattat |
287 |
Q |
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| T |
20608339 |
ttttgttgacaagctcaaaagtatctttattatacaataaaagtactattatatatactcactgtagaattat |
20608411 |
T |
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Back To:
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 30681917 - 30681965
Alignment:
| Q |
166 |
tagtacttttataatttctttcaaaattatatttatgtttctttgacat |
214 |
Q |
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| T |
30681917 |
tagtactcttataatttccttcaaacttttatttatgtttctttgacat |
30681965 |
T |
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