View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8913_low_37 (Length: 280)
Name: NF8913_low_37
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_37 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 43867396 - 43867653
Alignment:
| Q |
10 |
ggacatcaaatagcagacattattgaattattatacatgtaacacaacaaatatgtcttactcaaaaatttaatgcacaaaccctaatgggtccataaga |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43867396 |
ggacctcaaatagcagacattattgaattattatacatgtaacacaacaaatatgtcttactcaaaaatttaatgcacaaaccctaatgggtccataaga |
43867495 |
T |
|
| Q |
110 |
aatcctataattaaaaagacaaccaattagaattcagagaataagattaacttcaactctctagccaatcaacactaagatcataccaattggtgggtcc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43867496 |
aatcctataattaaaaagacaaccaattagaattcagagaataagattaacttcaactctctagccaatcaacactaagatcataccaattggtgggtcc |
43867595 |
T |
|
| Q |
210 |
cattaacctccattaatattcctgtagcaaattaccaaaagtgcatgggcagagagaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43867596 |
cattaacctccattaatattcctgtagcaaattaccaaaagtgcatgggcagagagaa |
43867653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University