View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8913_low_39 (Length: 271)
Name: NF8913_low_39
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 28675355 - 28675102
Alignment:
| Q |
4 |
ctctttcttccatcaactcgtcttgaatcccttcattttgaatccatgagacaaagttccctttatatagataataacctcaaaacaagatggccacaat |
103 |
Q |
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| T |
28675355 |
ctctttcttccatcaactcgtctcgaatcccttcattttgaatccatgagacaaagttccctttatatacataataacctcaaaacaagatggccacaat |
28675256 |
T |
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| Q |
104 |
cactagtgatttagcagggaattctcaaatttatgacagaaaaagtgaactaaaaaactttgatgagtcaaaggttggtgtccaaggacttgtagaaaat |
203 |
Q |
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| T |
28675255 |
cactagtgatttagcagggaattctcaaatttatgacagaaaaagtgaactaaaaaactttgatgagtcaaaggttggtgtccaaggacttgtagaaaat |
28675156 |
T |
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| Q |
204 |
ggtgtcacaaaagttccacgtatgttccattgtgaacaatctaatatcaatgat |
257 |
Q |
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| T |
28675155 |
ggtgtcacaaaagttccacgtatgttccattgtgaacaatctaatatcaatgat |
28675102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 28671146 - 28670961
Alignment:
| Q |
72 |
agataataacctcaaaacaagatggccacaatcactagt---gatttagcagggaattctcaaatttatgacagaaaaagtgaactaaaaaactttgatg |
168 |
Q |
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| T |
28671146 |
agataattaccacaaaacatgatggccacaatcacaagtaatgatgtagcaggaaattctccaatttatgacagaaaaagtgaactaaagaaatttgatg |
28671047 |
T |
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| Q |
169 |
agtcaaaggttggtgtccaaggacttgtagaaaatggtgtcacaaaagttccacgtatgttccattgtgaacaatctaatatcaat |
254 |
Q |
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| T |
28671046 |
agtcaaaggttggtgtccaaggacttacagaaaatggagtaacaaaagttccacgcatgttctattgtgaacaatctaatatcaat |
28670961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 28651362 - 28651240
Alignment:
| Q |
131 |
aatttatgacagaaaaagtgaactaaaaaactttgatgagtcaaaggttggtgtccaaggacttgtagaaaatggtgtcacaaaagttccacgtatgttc |
230 |
Q |
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||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |
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| T |
28651362 |
aatttatgacaaaaaaagtgaactaaaggagtttgatgagtcaaaggttggtgtccaaggacttgtagaaaatggagtaacaaaagttccacgcatgttc |
28651263 |
T |
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| Q |
231 |
cattgtgaacaatctaatatcaa |
253 |
Q |
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| T |
28651262 |
tattgtgaacaatctgatatcaa |
28651240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 131 - 259
Target Start/End: Complemental strand, 28642501 - 28642373
Alignment:
| Q |
131 |
aatttatgacagaaaaagtgaactaaaaaactttgatgagtcaaaggttggtgtccaaggacttgtagaaaatggtgtcacaaaagttccacgtatgttc |
230 |
Q |
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| T |
28642501 |
aatttatgacaaaaagagtgaactaaaggagtttgatgagtcaaaggttggtgtccaaggacttgtagaaaatggagtaacaaaagttccacacatgttc |
28642402 |
T |
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| Q |
231 |
cattgtgaacaatctaatatcaatgatgt |
259 |
Q |
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| T |
28642401 |
tattgtgaacaatctagtatcaatgatgt |
28642373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 28691690 - 28691605
Alignment:
| Q |
134 |
ttatgacagaaaaagtgaactaaaaaactttgatgagtcaaaggttggtgtccaaggacttgtagaaaatggtgtcacaaaagttc |
219 |
Q |
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| T |
28691690 |
ttatgacaggaaaagtgaattgaaagaatttgatgattcaaaagctggtgtgcaaggacttgtagaaaatggtgtcacaaatgttc |
28691605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 28696571 - 28696495
Alignment:
| Q |
138 |
gacagaaaaagtgaactaaaaaactttgatgagtcaaaggttggtgtccaaggacttgtagaaaatggtgtcacaaa |
214 |
Q |
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| T |
28696571 |
gacaggaaaagtgaattgaaagaatttgatgattcaaaagctggtgtgcaaggacttgtagaaaatggtgtcacaaa |
28696495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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