View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8913_low_48 (Length: 239)
Name: NF8913_low_48
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_48 |
 | |
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| [»] scaffold1393 (1 HSPs) |
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|
| [»] chr7 (5 HSPs) |
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| [»] chr6 (3 HSPs) |
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|
| [»] chr4 (4 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: scaffold1393 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold1393
Description:
Target: scaffold1393; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 1091 - 872
Alignment:
| Q |
20 |
tgtatttcttggggtcaacatcaaaggattgaagtaatgagagatgaaatagtttgtttcccgacgcacgtaagctgcaactattgatccctcaaccctt |
119 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1091 |
tgtatttcttggggtcaacatcaacgggttgaagtaatgagagatgaaatagtttgtttcccgacgcacataagctgcaactattgatccctcaaccctt |
992 |
T |
|
| Q |
120 |
gctttatttctcaccattcgctttgcataacccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
991 |
gctttatttctcaccattcgctttgcataacccatgaacctttcaaaaggatacatccacctatattgaacaggtccaccgagccaagcttcgtatgcga |
892 |
T |
|
| Q |
220 |
gatgcacaggaagatgttcc |
239 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
891 |
gatgcacaggaagatgttcc |
872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 4805808 - 4806027
Alignment:
| Q |
20 |
tgtatttcttggggtcaacatcaaaggattgaagtaatgagagatgaaatagtttgtttcccgacgcacgtaagctgcaactattgatccctcaaccctt |
119 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
4805808 |
tgtatttcttggggtcaacatcaacgggttgaagtaatgagagatgaaatagtttgtttcccgacgcacataagctgcaactattgatccctcaaccctt |
4805907 |
T |
|
| Q |
120 |
gctttatttctcaccattcgctttgcataacccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4805908 |
gctttatttctcaccattcgctttgcataacccatgaacctttcaaaaggatacatccacctatattgaacaggtccaccgagccaagcttcgtatgcga |
4806007 |
T |
|
| Q |
220 |
gatgcacaggaagatgttcc |
239 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4806008 |
gatgcacaggaagatgttcc |
4806027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 12764425 - 12764644
Alignment:
| Q |
20 |
tgtatttcttggggtcaacatcaaaggattgaagtaatgagagatgaaatagtttgtttcccgacgcacgtaagctgcaactattgatccctcaaccctt |
119 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12764425 |
tgtatttcttggggtcaacatcaacgggttgaagtaatgagagatgaaatagtttgtttcccgacgcacataagctgcaactattgatccctcaaccctt |
12764524 |
T |
|
| Q |
120 |
gctttatttctcaccattcgctttgcataacccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12764525 |
gctttatttctcaccattcgctttgcataacccatgaacctttcaaaaggatacatccacctatattgaacaggtccaccgagccaagcttcgtatgcga |
12764624 |
T |
|
| Q |
220 |
gatgcacaggaagatgttcc |
239 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
12764625 |
gatgcacaggaagatgttcc |
12764644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 12510427 - 12510605
Alignment:
| Q |
20 |
tgtatttcttggggtcaacatcaaaggattgaagtaatgagagatgaaatagtttgtttcccgacgcacgtaagctgcaactattgatccctcaaccctt |
119 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12510427 |
tgtatttcttggggtcaacatcaatgggttgaagtaatgagagatgaaatagtttgtttcccgacgcacgtaagctgcaactattgatccctcaaccctt |
12510526 |
T |
|
| Q |
120 |
gctttatttctcaccattcgctttgcataacccatgaaactttcaaaaggatatatccaccaatattgaacaggtccac |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
12510527 |
gctttatttctcaccattcgctttggataacccatgaacctttcaaaaggatacatccacctatattgaacaggtccac |
12510605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 7301741 - 7301831
Alignment:
| Q |
149 |
acccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgagatgcacaggaagatgttcc |
239 |
Q |
| |
|
||||||||| ||||||||||| || ||||||| ||||||||||||||| || || |||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
7301741 |
acccatgaatctttcaaaagggtacatccacctatattgaacaggtccgccaagtatagcttcatatgccagatgcataggaagatgttcc |
7301831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 18337624 - 18337714
Alignment:
| Q |
149 |
acccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgagatgcacaggaagatgttcc |
239 |
Q |
| |
|
||||||||| |||| |||||| || ||||||| ||||||||||||||| || || |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
18337624 |
acccatgaatcttttaaaagggtacatccacctatattgaacaggtccgccaagtatagcttcatatgccagatgcacaggaagatgttcc |
18337714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 7406640 - 7406859
Alignment:
| Q |
20 |
tgtatttcttggggtcaacatcaaaggattgaagtaatgagagatgaaatagtttgtttcccgacgcacgtaagctgcaactattgatccctcaaccctt |
119 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7406640 |
tgtatttcttggggtcaacatcaacgggttgaagtaatgagagatgaaatagtttgtttcccgacgcacataagctgcaactattgatccctcaaccctt |
7406739 |
T |
|
| Q |
120 |
gctttatttctcaccattcgctttgcataacccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7406740 |
gctttatttctcaccattcgctttgcataacccatgaacctttcaaaaggatacatccacctatattgaacaggtccaccgagccaagcttcgtatgcga |
7406839 |
T |
|
| Q |
220 |
gatgcacaggaagatgttcc |
239 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7406840 |
gatgcacaggaagatgttcc |
7406859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 14899898 - 14899765
Alignment:
| Q |
90 |
taagctgcaactattgatccctcaacccttgctttatttctcaccattcgctttgcataacccatgaaactttcaaaaggatatatccaccaatattgaa |
189 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || || ||||| ||||||||| ||| |||||||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
14899898 |
taagctgcaactattgatccttcaacccttgaattgttcttcaccgttcgctttgaatagcccatgaacctttcaaaaggatacatccacctgtattgaa |
14899799 |
T |
|
| Q |
190 |
caggtccaccgagccaagcttcgtatgcgagatg |
223 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |
|
|
| T |
14899798 |
caggtccaccgagccaagcttcgtacgcaagatg |
14899765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 4446682 - 4446772
Alignment:
| Q |
149 |
acccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgagatgcacaggaagatgttcc |
239 |
Q |
| |
|
||||||||| ||||||||||| || ||||||| ||||||||||||||| || || |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
4446682 |
acccatgaatctttcaaaagggtacatccacctatattgaacaggtccgccaagtatagcttcatatgccagatgcacaggaagatgttcc |
4446772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 22330654 - 22330437
Alignment:
| Q |
22 |
tatttcttggggtcaacatcaaaggattgaagtaatgagagatgaaatagtttgtttcccgacgcacgtaagctgcaactattgatccctcaacccttgc |
121 |
Q |
| |
|
||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22330654 |
tatttcttgggttcaacatcaacgggttgaagtaatgagagatgaaatagtttgtttcccgacgcacataagctgcaactattgatccctcaacccttgc |
22330555 |
T |
|
| Q |
122 |
tttatttctcaccattcgctttgcataacccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgaga |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22330554 |
tttatttctcaccattcgctttgcataacccatgaacctttcaaaaggatacatccacctttattgaacaggtccaccgagccaagcttcgtatgtgaga |
22330455 |
T |
|
| Q |
222 |
tgcacaggaagatgttcc |
239 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22330454 |
tgcacaggaagatgttcc |
22330437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 14809027 - 14808894
Alignment:
| Q |
90 |
taagctgcaactattgatccctcaacccttgctttatttctcaccattcgctttgcataacccatgaaactttcaaaaggatatatccaccaatattgaa |
189 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || || ||||| ||||||||| ||| |||||||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
14809027 |
taagctgcaactattgatccttcaacccttgaattgttcttcaccgttcgctttgaatagcccatgaacctttcaaaaggataaatccacctgtattgaa |
14808928 |
T |
|
| Q |
190 |
caggtccaccgagccaagcttcgtatgcgagatg |
223 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
14808927 |
taggtccaccgagccaagcttcgtacgcgagatg |
14808894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 38969038 - 38969128
Alignment:
| Q |
149 |
acccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgagatgcacaggaagatgttcc |
239 |
Q |
| |
|
||||||||| ||||||||||| || ||||||| ||||||||||||||| || || |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
38969038 |
acccatgaatctttcaaaagggtacatccacctatattgaacaggtccgccaagtatagcttcatatgccagatgcacaggaagatgttcc |
38969128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 10799330 - 10799417
Alignment:
| Q |
152 |
catgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgagatgcacaggaagatgttcc |
239 |
Q |
| |
|
|||||| ||||||||||| || ||||||| |||||||||||| ||||| ||| ||| || ||||| |||||||| | |||||||||| |
|
|
| T |
10799330 |
catgaatctttcaaaagggtacatccacctatattgaacaggcccaccaagcttagcctcatatgctagatgcaccgcaagatgttcc |
10799417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 21602373 - 21602240
Alignment:
| Q |
90 |
taagctgcaactattgatccctcaacccttgctttatttctcaccattcgctttgcataacccatgaaactttcaaaaggatatatccaccaatattgaa |
189 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || || ||||| ||||||||| ||| |||||||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
21602373 |
taagctgcaactattgatccttcaacccttgaattgttcttcaccgttcgctttgaatagcccatgaacctttcaaaaggatacatccacctgtattgaa |
21602274 |
T |
|
| Q |
190 |
caggtccaccgagccaagcttcgtatgcgagatg |
223 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
21602273 |
caggtccaccgagccaagcttcgtacgcgagatg |
21602240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 35597488 - 35597398
Alignment:
| Q |
149 |
acccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgagatgcacaggaagatgttcc |
239 |
Q |
| |
|
||||||||| ||||||||||| || ||||||| ||||||||||||||| || || |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
35597488 |
acccatgaatctttcaaaagggtacatccacctatattgaacaggtccgccaagtatagcttcatatgccagatgcacaggaagatgttcc |
35597398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 37367163 - 37367253
Alignment:
| Q |
149 |
acccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgagatgcacaggaagatgttcc |
239 |
Q |
| |
|
||||||||| ||||||||||| || |||||| ||||||||||||||| || || |||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
37367163 |
acccatgaatctttcaaaagggtacatccacttatattgaacaggtccgccaagtatagcttcatatgcaagatgcacatgaagatgttcc |
37367253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 30700 - 30833
Alignment:
| Q |
90 |
taagctgcaactattgatccctcaacccttgctttatttctcaccattcgctttgcataacccatgaaactttcaaaaggatatatccaccaatattgaa |
189 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || || ||||| ||||||||| ||| |||||||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
30700 |
taagctgcaactattgatccttcaacccttgaattgttcttcaccgttcgctttgaatagcccatgaacctttcaaaaggataaatccacctgtattgaa |
30799 |
T |
|
| Q |
190 |
caggtccaccgagccaagcttcgtatgcgagatg |
223 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
30800 |
taggtccaccgagccaagcttcgtacgcgagatg |
30833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 358017 - 358149
Alignment:
| Q |
91 |
aagctgcaactattgatccctcaacccttgctttatttctcaccattcgctttgcataacccatgaaactttcaaaaggatatatccaccaatattgaac |
190 |
Q |
| |
|
||||||||||||||||||| |||||||||| || || |||||||||| |||| ||| |||||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
358017 |
aagctgcaactattgatccttcaacccttgaattgttcttcaccattcgttttgaatagcccatgaacctttcaaaaggatacatccacctgtattgaac |
358116 |
T |
|
| Q |
191 |
aggtccaccgagccaagcttcgtatgcgagatg |
223 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| |
|
|
| T |
358117 |
aggtccactgagccaagcttcgtacgcgagatg |
358149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 23011214 - 23011126
Alignment:
| Q |
151 |
ccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgagatgcacaggaagatgttcc |
239 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23011214 |
ccatgaacctttcaaaaggatacctccacctatattgaacaagtccaccgagccaagcttcgtatgcgagatgcacaggaagatgttcc |
23011126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 33904680 - 33904770
Alignment:
| Q |
149 |
acccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgagatgcacaggaagatgttcc |
239 |
Q |
| |
|
||||||||| ||||||||||| || ||||||| ||||||||||||||| || || |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
33904680 |
acccatgaatctttcaaaagggtacatccacctatattgaacaggtccgccaagtatagcttcatatgccagatgcacaggaagatgttcc |
33904770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 14323281 - 14323143
Alignment:
| Q |
101 |
tattgatccctcaacccttgctttatttctcaccattcgctttgcataacccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccg |
200 |
Q |
| |
|
|||||||||||||||| | || ||||| |||| ||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||||| || ||| |
|
|
| T |
14323281 |
tattgatccctcaaccttagccttattcttcacacatcgctttgcatcacccatgaatctttcaaaaggatacatccacctatattgaacaggccctccg |
14323182 |
T |
|
| Q |
201 |
agccaagcttcgtatgcgagatgcacaggaagatgttcc |
239 |
Q |
| |
|
||| |||||||| ||||||||||| | ||||||||| |
|
|
| T |
14323181 |
agcatggcttcgtaagcgagatgcaccgatagatgttcc |
14323143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 28955800 - 28955711
Alignment:
| Q |
150 |
cccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgagatgcacaggaagatgttcc |
239 |
Q |
| |
|
|||||||| ||||||||||| || ||||||| |||||||||||| || || ||| ||| || ||||| |||||||| | |||||||||| |
|
|
| T |
28955800 |
cccatgaatctttcaaaagggtacatccacctatattgaacaggcccgccaagcttagcctcatatgccagatgcactgcaagatgttcc |
28955711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 37570506 - 37570596
Alignment:
| Q |
149 |
acccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgagatgcacaggaagatgttcc |
239 |
Q |
| |
|
||||||||| ||||||||||| || ||||||| ||||||||||||||| || || |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
37570506 |
acccatgaatctttcaaaagggtacatccacctatattgaacaggtccgccaagtatagcttcatatgccagatgcacaggaagatgttcc |
37570596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 23959862 - 23959760
Alignment:
| Q |
137 |
tcgctttgcataacccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgagatgcacaggaagatgt |
236 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||| ||| ||| |||||||||||| || |||||| |||||||| ||||||| ||| || |||||| |
|
|
| T |
23959862 |
tcgctttgcatcacccatgaatctttcaaaaggatacatctacctatattgaacaggccctccgagcatggcttcgtaagcgagatacaccggcagatgt |
23959763 |
T |
|
| Q |
237 |
tcc |
239 |
Q |
| |
|
||| |
|
|
| T |
23959762 |
tcc |
23959760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 57177 - 57266
Alignment:
| Q |
150 |
cccatgaaactttcaaaaggatatatccaccaatattgaacaggtccaccgagccaagcttcgtatgcgagatgcacaggaagatgttcc |
239 |
Q |
| |
|
|||||||| ||||||||||| || ||||||| |||||||||||| ||||| ||| ||| || ||||| |||||||| | |||||||||| |
|
|
| T |
57177 |
cccatgaatctttcaaaagggtacatccacctatattgaacaggcccaccaagcttagcctcatatgccagatgcaccgcaagatgttcc |
57266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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