View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8913_low_9 (Length: 492)
Name: NF8913_low_9
Description: NF8913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8913_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 477
Target Start/End: Complemental strand, 28088712 - 28088252
Alignment:
| Q |
17 |
acaacaagaaaacaataacagaagcatgcccctgctaaaacataacacagnnnnnnntttcccaacaaacagcagcaggttccacaaaacgtaaggggaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28088712 |
acaacaagaaaacaataacagaagcatgcccctgctaaaacataacacagaaaaaaacttcccaacaaacagcagcaggttccacaaaacgtaaggggaa |
28088613 |
T |
|
| Q |
117 |
ggaaaacaaaaagcacccatctgcactagcacaaacagtcgctgccacatgaaaacagaacacagaaaaaaccttcacctgctctgaatatacaccacag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28088612 |
ggaaaacaaaaagcacccatctgcactagcacaaacagtcgctgccacatgaaaacagaacacagaaaaaaccttcacctgctctgaatatacaccacag |
28088513 |
T |
|
| Q |
217 |
aagagctaaatactgacaaactgagttaaaaaacaatagcagctacgacaaccccccggcaacaactaaggtatctgtctagtacacacaacctattcct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28088512 |
aagagctaaatactgacaaactgagttaaaaaacaaaagcagctacgacaaccccccggcaacaactaaggtatctgtctagtacacacaacctattcct |
28088413 |
T |
|
| Q |
317 |
gaatatataatcgtttcatgccttccgaagaacccaaaccagtgccgaattaaccaataactccttctaagcttctacaactgagcctcctctataaaac |
416 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28088412 |
gaatatatgatcgtttcatgccttccgaagaacccaaaccagtgccgaattaaccaataactccttctaagcttctacaactgagcctcctctataaaac |
28088313 |
T |
|
| Q |
417 |
attccaaatgtacaaaaaggttcgatggagtaataaaaccaataccaagccatctaaacac |
477 |
Q |
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| T |
28088312 |
attccaaatgtagaaaaaagtttgatggagtaataaaaccaataccaagccatctaaacac |
28088252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 26641945 - 26642194
Alignment:
| Q |
17 |
acaacaagaaaacaataacagaagcatgcccctgctaaaacataacacagnnnnnnnt--------ttcccaacaaacagcagcaggttccacaaaacgt |
108 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||| ||||||| |
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| T |
26641945 |
acaacaagaaaacaacaacagaagcatgcccctgctaaaacaaaacacagaaaaacatgaaaacacttccccacaaacagcagcaggttccgcaaaacgc |
26642044 |
T |
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| Q |
109 |
aaggggaaggaaaacaaaaagcacccatctgcactagcacaaacagtcgctgccacatgaaaacagaacacagaaaaaaccttcacctgctctgaatata |
208 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
26642045 |
aaggggaaggaaaacaaaaagcacccatctgtactagcacaaacagtcgctgccacatgaaaacagaacatagaaaaaaccttcacctg-------aata |
26642137 |
T |
|
| Q |
209 |
caccacagaagagctaaata---ctgacaaactgagttaaaaaacaatagcagctac |
262 |
Q |
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|||||||||| ||| ||||| | |||||||||| ||||||||||||||||||||| |
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| T |
26642138 |
caccacagaatagccaaataccgcagacaaactgaattaaaaaacaatagcagctac |
26642194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 28104959 - 28105069
Alignment:
| Q |
75 |
ttcccaacaaacagcagcaggttccacaaaacgtaaggggaaggaaaacaaaaagcacccatctgcactagcacaaacagtcgctgccacatgaaaacag |
174 |
Q |
| |
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||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
28104959 |
ttccccacaaacagcagcaggttccgcaaaacgcaaggggaaggaaaacaaaaagcacccatctgtacaagcacaaacagtcgctgccacatgaaaacag |
28105058 |
T |
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| Q |
175 |
aacacagaaaa |
185 |
Q |
| |
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|||| |||||| |
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| T |
28105059 |
aacatagaaaa |
28105069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 307 - 480
Target Start/End: Original strand, 28105154 - 28105331
Alignment:
| Q |
307 |
acctattcctgaatatataatcgtttcatgccttccgaagaacccaaaccagtgccgaattaaccaataactccttctaagcttctacaactgagcctcc |
406 |
Q |
| |
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|||||||| ||||||||| ||| ||| |||| | ||| |||||||||||||||| |||||||||||||| |||||||| ||||| | || ||| ||| |
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| T |
28105154 |
acctattcttgaatatatgatcatttttcgcctacagaataacccaaaccagtgccaaattaaccaataaccccttctaaacttcttcgaccgagactct |
28105253 |
T |
|
| Q |
407 |
tctataaaacattccaaatgtac---aaaaaggttcgatggagtaat-aaaaccaataccaagccatctaaacaccaa |
480 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
28105254 |
cctataaaacattccaaatgtacaaaaaaaaggtttgatggagtaataaaaaccaataccaacccatctaaacaccaa |
28105331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 28104894 - 28104942
Alignment:
| Q |
17 |
acaacaagaaaacaataacagaagcatgcccctgctaaaacataacacag |
66 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||| ||||||| |
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| T |
28104894 |
acaacaagaaa-caacaacagaagcatgcccctgctaaaacaaaacacag |
28104942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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