View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8914_high_1 (Length: 829)
Name: NF8914_high_1
Description: NF8914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8914_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 390
Target Start/End: Complemental strand, 10425692 - 10425317
Alignment:
| Q |
15 |
cagagaatggccaacataattaatcttctgccctgtttggctgaacacataatcaaaaacagcaggtagatcataggtaacaagttcatcccatgaccaa |
114 |
Q |
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| T |
10425692 |
cagagaatggccaacgtaattaatcttctgccctgtttggctgaacacataatcaaaaacagcaggtagatcatagataacaagttcatcccatgaccaa |
10425593 |
T |
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| Q |
115 |
ttccaaaaggcctgtcatatttataacacagaaagtgtcaattaataaatggnnnnnnnnnnnnnnnnngacaaagaaaaatttatgtattagagaaggt |
214 |
Q |
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| T |
10425592 |
ttccaaaaggcctgtcatatttataacacagaaagtgtcaattaataaatggttttctttttcttttttgacaaagaaaaatttatgtattagagaaggt |
10425493 |
T |
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| Q |
215 |
acactctcatgcaaagctagaagatacactaatttcattaaggattattacattaaagggnnnnnnnncaaataaatttagt-acttcnnnnnnncattt |
313 |
Q |
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| T |
10425492 |
acactctcatgcaaagctagaagatacactaatttcattaagggttattacattaaaggg-tttttttcaaataaatttagtaatttgaaaaaaacattt |
10425394 |
T |
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| Q |
314 |
tccactctactttatttctaacagttttaatttgtaacaaccagataataaatggtaacaataaaattggtcgtcct |
390 |
Q |
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| T |
10425393 |
tccactctactttatttctaacagttttaatttgtaacaaccacataataaatgctaacaataaaattggtcttcct |
10425317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 407 - 506
Target Start/End: Complemental strand, 10425267 - 10425167
Alignment:
| Q |
407 |
aattggtctcaa-tacttacactgatctctcaacaataaaaaatttcatttggatcatcaataatttcaagcattgacaaactttgtcatttctattaga |
505 |
Q |
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| T |
10425267 |
aattggtctcaaatacttaaactggtctctcaacaataaaaaatatcatttggatcatcaataattacaagtattgacaaactttgtcatttctattaga |
10425168 |
T |
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| Q |
506 |
a |
506 |
Q |
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| T |
10425167 |
a |
10425167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 553
Target Start/End: Complemental strand, 10425179 - 10425142
Alignment:
| Q |
516 |
atttctatcagaagcaactttaaataagtagttggatt |
553 |
Q |
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| T |
10425179 |
atttctattagaagcaactttaaataagtagttggatt |
10425142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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