View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8914_high_7 (Length: 229)

Name: NF8914_high_7
Description: NF8914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8914_high_7
NF8914_high_7
[»] chr5 (2 HSPs)
chr5 (73-167)||(24428576-24428670)
chr5 (1-43)||(24428471-24428513)
[»] scaffold0790 (1 HSPs)
scaffold0790 (114-169)||(620-675)
[»] chr1 (1 HSPs)
chr1 (139-170)||(36938052-36938083)
[»] chr6 (1 HSPs)
chr6 (138-170)||(29017958-29017990)
[»] chr4 (1 HSPs)
chr4 (139-167)||(46899888-46899916)
[»] chr3 (1 HSPs)
chr3 (139-175)||(44589419-44589455)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 24428576 - 24428670
Alignment:
Q  73 aatttgattattcttgaacggactatgccatagggagattgatttttacgattttggggattttttagtgttgtcaattgtggatcacagaaaat 167  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24428576 aatttgattattcttgaacggactatgctatagggagattgatttttacgattttggggaatttttagtgttgtcaattgtggatcacagaaaat 24428670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24428471 - 24428513
Alignment:
Q  1 tattatcaccaatggtaatttctttctcaatcatcatcaccaa 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24428471 tattatcaccaatggtaatttctttctcaatcatcatcaccaa 24428513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 620 - 675
Alignment:
Q  114 atttttacgattttggggattttttagtgttgtcaattgtggatcacagaaaatag 169  Q
    |||||||||| ||| |||||||||||||||||||||| || |||||||||||||||    
T  620 atttttacgaattttgggattttttagtgttgtcaatcgtcgatcacagaaaatag 675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 170
Target Start/End: Complemental strand, 36938083 - 36938052
Alignment:
Q  139 agtgttgtcaattgtggatcacagaaaatagc 170  Q
    ||||||||||||||||||||||||||||||||    
T  36938083 agtgttgtcaattgtggatcacagaaaatagc 36938052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 29017958 - 29017990
Alignment:
Q  138 tagtgttgtcaattgtggatcacagaaaatagc 170  Q
    ||||||||||||||||||||| |||||||||||    
T  29017958 tagtgttgtcaattgtggatcgcagaaaatagc 29017990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 46899888 - 46899916
Alignment:
Q  139 agtgttgtcaattgtggatcacagaaaat 167  Q
    |||||||||||||||||||||||||||||    
T  46899888 agtgttgtcaattgtggatcacagaaaat 46899916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 44589419 - 44589455
Alignment:
Q  139 agtgttgtcaattgtggatcacagaaaatagcttatt 175  Q
    |||||||||||||||||||||  ||||||||||||||    
T  44589419 agtgttgtcaattgtggatcatggaaaatagcttatt 44589455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University