View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8914_low_3 (Length: 689)
Name: NF8914_low_3
Description: NF8914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8914_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 71 - 489
Target Start/End: Original strand, 32157597 - 32157999
Alignment:
| Q |
71 |
atgtaaaaggaagagataaaagtttgtgatgagagattcagaacaaggttgaatgaattatgtaggaaacaaagatggttggatttgaagggtatgtaac |
170 |
Q |
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| T |
32157597 |
atgtaaaaggaagagataaaagtttgtgatgagagattcagaacaaggttgaatgaattatgtaggaaacaaagatggttggatttgaagggtatgtaac |
32157696 |
T |
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| Q |
171 |
atgttacgtgtttttaaggagacaggacactgttgtaggaacagagttcaagcaattccaccgactatgtgcttgtttgcttaaccgcgtaatcatcgta |
270 |
Q |
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| T |
32157697 |
atgttacgtgtt----------------actgttgtaggaacagagttcaagcaattccaccgaccatgtgcttgtttgcttaaccgcgtaatcatcgta |
32157780 |
T |
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| Q |
271 |
ttttttaatgaaaaagaattgtcaaaataggtacgtattctggtggagcagttgtttctctactcaagatgacatcaccaatagtccacaatgttctatt |
370 |
Q |
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| T |
32157781 |
ttttttaatgaaaaagaattgtcaaaataggtacgtattctggtggagcagttgtttctctactcaagatgacatcaccaatagtccacaatgttctatt |
32157880 |
T |
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| Q |
371 |
tcatttcatggctatgtattttgaaatttagtacatctttggattgaggtgagtttgtcaagatgatggtcgtattgtattgtcattcttttgaagtgta |
470 |
Q |
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| T |
32157881 |
tcatttcatggctatgtattttgaaatttagtacatctttggattgaggtgagtttgtcgagatgatggtcgtattgtattgtcattcttttgaagtgta |
32157980 |
T |
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| Q |
471 |
tgtttgatttgggggtgtt |
489 |
Q |
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| T |
32157981 |
tgtttgatttgggggtgtt |
32157999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 532 - 674
Target Start/End: Original strand, 32158042 - 32158184
Alignment:
| Q |
532 |
tattttttattgagttgagctacgtcgctcttttaagacttttgtggtactgtttaacattgtgcaactagacaatcaatcatgacgtccacatgataaa |
631 |
Q |
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| T |
32158042 |
tattttttattgagttgagctaaatcgctcttttaagacttttgtggtactgtttaacattgtgcaactagacaatcaatcatgacgtccacatgataaa |
32158141 |
T |
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| Q |
632 |
acaacttgactacaactgcatcgaagtcctactatactctgtg |
674 |
Q |
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| T |
32158142 |
acaacttgactacaactgcatcgaagtcctactatactctgtg |
32158184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 587 - 672
Target Start/End: Complemental strand, 23489565 - 23489480
Alignment:
| Q |
587 |
aacattgtgcaactagacaatcaatcatgacgtccacatgataaaacaacttgactacaactgcatcgaagtcctactatactctg |
672 |
Q |
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| T |
23489565 |
aacattatgcaagtagacaatcaatcacgacgtcctcaagataaaacaactcaactacaactgtattgaagtcctactgtactctg |
23489480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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