View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8914_low_7 (Length: 306)

Name: NF8914_low_7
Description: NF8914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8914_low_7
NF8914_low_7
[»] chr7 (20 HSPs)
chr7 (13-290)||(8538779-8539061)
chr7 (17-202)||(8582642-8582827)
chr7 (26-271)||(8546663-8546910)
chr7 (38-217)||(8572590-8572769)
chr7 (38-214)||(8577289-8577465)
chr7 (13-199)||(8591373-8591559)
chr7 (116-199)||(8560773-8560856)
chr7 (17-103)||(8568817-8568903)
chr7 (13-136)||(8635503-8635626)
chr7 (13-127)||(7876847-7876961)
chr7 (17-136)||(13332154-13332273)
chr7 (25-136)||(8602721-8602832)
chr7 (15-136)||(3148348-3148469)
chr7 (42-206)||(8660248-8660412)
chr7 (17-217)||(29576912-29577112)
chr7 (13-136)||(8647676-8647799)
chr7 (83-202)||(17269145-17269264)
chr7 (13-127)||(10493014-10493128)
chr7 (83-136)||(17261437-17261490)
chr7 (84-136)||(6790456-6790508)
[»] chr8 (1 HSPs)
chr8 (27-217)||(12529857-12530047)
[»] chr2 (5 HSPs)
chr2 (38-136)||(12257918-12258016)
chr2 (38-175)||(12244368-12244505)
chr2 (26-136)||(16656604-16656714)
chr2 (84-133)||(12000379-12000428)
chr2 (38-199)||(14705463-14705624)
[»] chr4 (1 HSPs)
chr4 (38-206)||(35133454-35133622)
[»] chr1 (2 HSPs)
chr1 (41-199)||(34465189-34465347)
chr1 (13-139)||(4677541-4677667)
[»] chr5 (1 HSPs)
chr5 (51-136)||(42554191-42554276)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 8538779 - 8539061
Alignment:
Q  13 agacagtgtttgctgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtt 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8538779 agacagtgtttgttgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaaccaacacaagaaggtgtggttttgtt 8538878  T
Q  113 tccttgatcgttgtgtatgatctccacacgatcgttttgctcctgccacactccaacacatgagtaggtcatgccaaggtcaattccgatagcagctccc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8538879 tccttgatcgttgtgtatgatctccacacgatcgttttgctcctgccacactccaacacatgagtaggtcgtgccaaggtcaattccgatagcagctccc 8538978  T
Q  213 tcatannnnnnngccattgtttcaagtgaatcaaactgtttgtacagaagat-----ttaaattcatactttggaaaagatat 290  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||    
T  8538979 tcatatttttttgccattgtttcaagtgaatcaaactgtttgtacagaagatttgaattaaattcatactttggaaaagatat 8539061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 8582642 - 8582827
Alignment:
Q  17 agtgtttgctgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttcct 116  Q
    |||||| | ||||||||| | |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||    
T  8582642 agtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttcct 8582741  T
Q  117 tgatcgttgtgtatgatctccacacgatcgttttgctcctgccacactccaacacatgagtaggtcatgccaaggtcaattccgat 202  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  8582742 tgatcattgtgtatgatttccacacgatcgttttgctcctgccacactccaacacatgagtaggttgtaccaaggtcaattccgat 8582827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 26 - 271
Target Start/End: Original strand, 8546663 - 8546910
Alignment:
Q  26 tgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttccttgatcgttg 125  Q
    ||||||||| ||||| |||||||||||||||||||||||||  | ||| |||||  | |||||||||||||||||||| ||||||||||||||||| |||    
T  8546663 tgggttagaagaagcctgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattg 8546762  T
Q  126 tgtatgatctccacacgatcgttttgctcctgccacactccaacacatgagtaggtcatgccaaggtcaattccgatagcagctccctcatannnnnnng 225  Q
    || ||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||       |    
T  8546763 tgaatgatttccacacgatcgttctgctcctgccatactccaacacatgagtaagtcgtgccaaggtcaattccgatcgcaactccctcatatttttttg 8546862  T
Q  226 ccattgt--ttcaagtgaatcaaactgtttgtacagaagatttaaatt 271  Q
    |||||||  ||||||||||| |||| ||||||| ||||||||| ||||    
T  8546863 ccattgtgcttcaagtgaatgaaaccgtttgtagagaagatttgaatt 8546910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 8572590 - 8572769
Alignment:
Q  38 agcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctcc 137  Q
    |||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||| || || ||| |||||||||| || ||||||||||| ||     
T  8572590 agcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcattgtgtatgatttca 8572689  T
Q  138 acacgatcgttttgctcctgccacactccaacacatgagtaggtcatgccaaggtcaattccgatagcagctccctcata 217  Q
    |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||    
T  8572690 acacgatcattttgctcctgccacactccaacacatgagtaagtcgtgccaaggtcaattccgatcgcaactccctcata 8572769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 38 - 214
Target Start/End: Original strand, 8577289 - 8577465
Alignment:
Q  38 agcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctcc 137  Q
    ||||||||||||||||||||| |||||||||| |||||||||  ||||||||||||||||||| |||||| ||||||||||||| |||||||| || ||     
T  8577289 agcttgatttttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataatttct 8577388  T
Q  138 acacgatcgttttgctcctgccacactccaacacatgagtaggtcatgccaaggtcaattccgatagcagctccctc 214  Q
    |||||||||||||| || ||||| ||||||||||||||||| ||| |||||||||||||||| || ||| |||||||    
T  8577389 acacgatcgttttgttcatgccatactccaacacatgagtaagtcgtgccaaggtcaattccaatggcaactccctc 8577465  T

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Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 8591373 - 8591559
Alignment:
Q  13 agacagtgtttgctgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtt 112  Q
    |||||||||||||||||||||| | ||| || ||||| ||||||||||||||||| | ||||  |||| ||||||||||| ||||||||||  || | ||    
T  8591373 agacagtgtttgctgggttagaagcagcctggttttttgcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaattctatt 8591472  T
Q  113 tccttgatcgttgtgtatgatctccacacgatcgttttgctcctgccacactccaacacatgagtaggtcatgccaaggtcaattcc 199  Q
    ||||||||| ||||| || |||||  |   || |||||| |||||||| ||| | |||||||| || ||  ||||||||||||||||    
T  8591473 tccttgatcattgtgaataatctctgctgtattgttttggtcctgccaaactgctacacatgaatacgttgtgccaaggtcaattcc 8591559  T

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Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 8560773 - 8560856
Alignment:
Q  116 ttgatcgttgtgtatgatctccacacgatcgttttgctcctgccacactccaacacatgagtaggtcatgccaaggtcaattcc 199  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||  | ||||||||||||||    
T  8560773 ttgatcattgtgtatgatttccacacgattgttttgctcctgccatactccaacacatgagtaggttgttccaaggtcaattcc 8560856  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 8568817 - 8568903
Alignment:
Q  17 agtgtttgctgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgt 103  Q
    |||||| | ||| ||||| | |||||||||||||||||||||||||||||||| |||||| ||| | ||||||||||||||||||||    
T  8568817 agtgttggttggattagaagcagcttgatttttggcagcatcaccaatcaatctttgagatttagtgaaagcaacacaagaaggtgt 8568903  T

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Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 8635626 - 8635503
Alignment:
Q  13 agacagtgtttgctgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtt 112  Q
    ||||||| || | ||||||||||||||| || ||||||||||||||||||||||| | ||| |  | | | ||||||||||||||||||||| || ||||    
T  8635626 agacagtattggatgggttagaggaagcctggtttttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtgattctgtt 8635527  T
Q  113 tccttgatcgttgtgtatgatctc 136  Q
     ||||| || ||||| ||||||||    
T  8635526 cccttgctcattgtggatgatctc 8635503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 7876961 - 7876847
Alignment:
Q  13 agacagtgtttgctgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtt 112  Q
    |||||||||| | ||||||||||| ||| |||||||||||||||||||||||||| | ||||  |||  | ||||||||| |||||||||| ||| ||||    
T  7876961 agacagtgttggatgggttagaggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgtt 7876862  T
Q  113 tccttgatcgttgtg 127  Q
     ||||| || |||||    
T  7876861 gccttgttcattgtg 7876847  T

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Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 13332273 - 13332154
Alignment:
Q  17 agtgtttgctgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttcct 116  Q
    ||||||| | ||||||| || || |||||| |||||||||||||||||||||| ||||  |||  | ||||||||| |||||||||| ||| | ||||||    
T  13332273 agtgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttcct 13332174  T
Q  117 tgatcgttgtgtatgatctc 136  Q
    ||||| ||||| || |||||    
T  13332173 tgatcattgtgaataatctc 13332154  T

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Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 8602721 - 8602832
Alignment:
Q  25 ctgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttccttgatcgtt 124  Q
    |||||||||| | ||| |||||||||||||||||||| ||||| | || |  || | ||||||||||| ||||||| || ||| ||||||||||||| ||    
T  8602721 ctgggttagaagcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcatt 8602820  T
Q  125 gtgtatgatctc 136  Q
    ||| || |||||    
T  8602821 gtgaataatctc 8602832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 3148348 - 3148469
Alignment:
Q  15 acagtgtttgctgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttc 114  Q
    ||||||||| | ||||| | || ||||||||| || ||||||||||||| ||| | ||||  || | | ||||||||| ||||||||||||||||||| |    
T  3148348 acagtgttttcagggtttgtgggagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgc 3148447  T
Q  115 cttgatcgttgtgtatgatctc 136  Q
    |||| || ||||| || |||||    
T  3148448 cttggtcattgtgaataatctc 3148469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 206
Target Start/End: Original strand, 8660248 - 8660412
Alignment:
Q  42 tgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctccacac 141  Q
    ||||| || ||||||||||||||||| | ||||   | | | ||||||||| | |||||||| |||||||||||||| |||||||  |||||||| || |    
T  8660248 tgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatctcgactc 8660347  T
Q  142 gatcgttttgctcctgccacactccaacacatgagtaggtcatgccaaggtcaattccgatagca 206  Q
    ||| ||  | |||| |||||||  ||||||| || |||||  | |||||||| ||||| ||||||    
T  8660348 gattgtgattctccagccacacagcaacacacgaataggttgttccaaggtctattccaatagca 8660412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 29577112 - 29576912
Alignment:
Q  17 agtgtttgctgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttcct 116  Q
    |||||| | |||||| |||| ||| |||||||| ||||||| |||||| || | | | |||| | | ||||| |||  ||||||||||||| | || |||    
T  29577112 agtgttggttgggtttgaggcagcctgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtggttctattgcct 29577013  T
Q  117 tgatcgttgtgtatgatctccacacgatcgttttgctcctgccacactccaacacatgagtaggtcatgccaaggtcaattccgatagcagctccctcat 216  Q
    ||||| ||||| ||||||||  | |||| |||  ||| |||||| ||| | || ||||| |||||| |||||||||| ||||| || |||| ||| ||||    
T  29577012 tgatcattgtggatgatctcagctcgattgttacgctgctgccaaactgctacgcatgaataggtcgtgccaaggtcgattccaatggcaggtccttcat 29576913  T
Q  217 a 217  Q
    |    
T  29576912 a 29576912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 8647676 - 8647799
Alignment:
Q  13 agacagtgtttgctgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtt 112  Q
    |||||||||| |  |||||||| | ||| |||||||| || |||||||||||||| | ||||  ||   | ||||||||| |||||||||| ||| ||||    
T  8647676 agacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtagttctgtt 8647775  T
Q  113 tccttgatcgttgtgtatgatctc 136  Q
    ||||||||| ||||| || |||||    
T  8647776 tccttgatcattgtgaataatctc 8647799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 17269145 - 17269264
Alignment:
Q  83 aaaagcaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctccacacgatcgttttgctcctgccacactccaacacatgagtaggtc 182  Q
    |||||||||| |||| || || |||||||| |||||||| |||||||| ||||| || | | ||| ||  || ||||||||  ||||||||||||| |||    
T  17269145 aaaagcaacaaaagacggagtagttttgttgccttgatcattgtgtataatctcaactctaccgtgttcttcatgccacacagcaacacatgagtatgtc 17269244  T
Q  183 atgccaaggtcaattccgat 202  Q
     | |||||||| ||||||||    
T  17269245 gtcccaaggtctattccgat 17269264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 10493128 - 10493014
Alignment:
Q  13 agacagtgtttgctgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtt 112  Q
    |||| |||||| | ||||||| || || |||||| || ||||||||||| ||||| | ||||  |||  | ||||||||| |||||||||| ||| | ||    
T  10493128 agacggtgttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatt 10493029  T
Q  113 tccttgatcgttgtg 127  Q
    ||||||||| |||||    
T  10493028 tccttgatcattgtg 10493014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 17261437 - 17261490
Alignment:
Q  83 aaaagcaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctc 136  Q
    |||||||||| ||||||| ||  |||||||||||||||| ||||| ||||||||    
T  17261437 aaaagcaacaaaagaaggagtaattttgtttccttgatcattgtgaatgatctc 17261490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 6790456 - 6790508
Alignment:
Q  84 aaagcaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctc 136  Q
    ||||||||| ||||||||||||||||||| ||||| || ||||| || |||||    
T  6790456 aaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaataatctc 6790508  T

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Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 12529857 - 12530047
Alignment:
Q  27 gggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttccttgatcgttgt 126  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||    
T  12529857 gggttagaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgt 12529956  T
Q  127 gtatgatctccacacgatcgttttgctcctgccacactccaacacatgagtaggtcatgccaaggtcaattccgatagcagctccctcata 217  Q
    | || || |||||||||||  ||||||| ||||| ||||||||||||||||| ||  ||||||| |||||||| |||||| |||| |||||    
T  12529957 gaattatttccacacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctatagcaactccttcata 12530047  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 12258016 - 12257918
Alignment:
Q  38 agcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctc 136  Q
    ||||||||| || ||||||||||||||||| | ||||   ||| ||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||    
T  12258016 agcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgatctc 12257918  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 12244505 - 12244368
Alignment:
Q  38 agcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctcc 137  Q
    |||||||||||| |||||||||||||| || | ||||   | | | |||||||||||||||||||| ||| |||| || ||||||||||| ||||| ||     
T  12244505 agcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgatttca 12244406  T
Q  138 acacgatcgttttgctcctgccacactccaacacatga 175  Q
    ||||||  || ||| |||||||| ||| ||||||||||    
T  12244405 acacgagagtgttgttcctgccatactgcaacacatga 12244368  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 16656714 - 16656604
Alignment:
Q  26 tgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttccttgatcgttg 125  Q
    |||||||| || | ||||||| || ||||||||||| ||||| | ||||  || | | ||||||||| |||||||||| ||| ||||||| || || |||    
T  16656714 tgggttagcggcaacttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattg 16656615  T
Q  126 tgtatgatctc 136  Q
    |||||||||||    
T  16656614 tgtatgatctc 16656604  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 12000379 - 12000428
Alignment:
Q  84 aaagcaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgat 133  Q
    ||||||||||||||||||||  ||||||| |||||||||||||| |||||    
T  12000379 aaagcaacacaagaaggtgttattttgttgccttgatcgttgtgaatgat 12000428  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 14705463 - 14705624
Alignment:
Q  38 agcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctcc 137  Q
    ||||||||| || ||||||||||||||||| || |||   |   | ||||||||| ||||||| || ||| | || |||||||||||||| ||||| ||     
T  14705463 agcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgttctattgccttgatcgttgtgaatgatttca 14705562  T
Q  138 acacgatcgttttgctcctgccacactccaacacatgagtaggtcatgccaaggtcaattcc 199  Q
    || ||||  | ||| |||||||| ||| ||||||||||||| ||  | |||||||| |||||    
T  14705563 actcgataatgttgttcctgccatactgcaacacatgagtacgttgtaccaaggtctattcc 14705624  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 35133454 - 35133622
Alignment:
Q  38 agcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctcc 137  Q
    ||||||||| || ||||||||||| ||||| | ||||   ||| | ||||||| |||||||||||| |||||||| | |||||||||||| ||||| ||     
T  35133454 agcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaatgatttcg 35133553  T
Q  138 acacgatcgttttgctcctgccacactccaacacatgagtaggtcatgccaaggtcaattccgatagca 206  Q
    || |||| || ||| || ||||| ||| |||||||||| || ||  | || ||||| ||||||||||||    
T  35133554 actcgatagtgttgttcttgccatactgcaacacatgaatacgttgttccgaggtctattccgatagca 35133622  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 34465347 - 34465189
Alignment:
Q  41 ttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctccaca 140  Q
    |||||| || ||||||| ||| ||||||| ||||  || | ||||||||||| |||||||||||||| |||| ||||| || ||||  || ||||| ||     
T  34465347 ttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattgtcaataatctctact 34465248  T
Q  141 cgatcgttttgctcctgccacactccaacacatgagtaggtcatgccaaggtcaattcc 199  Q
    | |  || ||| |||||||| ||| ||||||||||||||||  |||||||||| |||||    
T  34465247 ctactgtgttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcc 34465189  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 4677667 - 4677541
Alignment:
Q  13 agacagtgtttgctgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtt 112  Q
    ||||||||||| | | ||| | || || |||||| || ||||||| ||||||||| | ||||  || | ||||||||||| |||||||||| ||||||||    
T  4677667 agacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgtt 4677568  T
Q  113 tccttgatcgttgtgtatgatctccac 139  Q
     ||||| || ||||  || ||||||||    
T  4677567 gccttgttcattgtaaataatctccac 4677541  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 42554276 - 42554191
Alignment:
Q  51 gcagcatcaccaatcaatcgttgagaattactaaaagcaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctc 136  Q
    ||||||||||||||||| | || |  || | ||||||||||| |||||||||| |||||||| |||||||| ||||| || |||||    
T  42554276 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttgatcattgtgaataatctc 42554191  T

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