View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8914_low_9 (Length: 294)
Name: NF8914_low_9
Description: NF8914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8914_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 40121613 - 40121879
Alignment:
| Q |
1 |
actgctaagaacattgttccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactacta |
100 |
Q |
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| T |
40121613 |
actgctaagaatattgttccttctcttccaatgaaaaatctatcaagcagagacaatgttgaagtgtcctctccattagtgccggtgagcactactacta |
40121712 |
T |
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| Q |
101 |
ccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaatatgtacacctagtttgttggaaatgaatttgttctc |
200 |
Q |
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| T |
40121713 |
ccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaata---acacctagtttgttggaaatgaatttgttctc |
40121809 |
T |
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| Q |
201 |
accaacttcttttggtaactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaag |
270 |
Q |
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| T |
40121810 |
accaacttcttttggtaactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaag |
40121879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 40125283 - 40125531
Alignment:
| Q |
19 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
118 |
Q |
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| T |
40125283 |
ccttcccttccaatgaaaaacttcacaaacaaagacactgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40125379 |
T |
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| Q |
119 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaatatgtacacctagtttgttggaaatgaatttgttctcaccaacttcttttgg |
215 |
Q |
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| T |
40125380 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaattgaatttgctctcaccaacttcttttgg |
40125476 |
T |
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| Q |
216 |
taactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaag |
270 |
Q |
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| T |
40125477 |
taactggtgttttgttcctcccatcatcaccccaagagtttgatttgtttggaag |
40125531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 40092811 - 40093057
Alignment:
| Q |
19 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
118 |
Q |
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| T |
40092811 |
ccttcccttccaatgaaaaacttcacaaacaaagacagtgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40092907 |
T |
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| Q |
119 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaatatgtacacctagtttgttggaaatgaatttgttctcaccaacttcttttgg |
215 |
Q |
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|||||||||||||||||||||||||| |||| |||| ||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
40092908 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaattgaatttgctctcaccaacttcttttgg |
40093004 |
T |
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| Q |
216 |
taactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttgga |
268 |
Q |
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| T |
40093005 |
taactggtgttttgttcctcccatcatcaccccaagagtttgatttgtttgga |
40093057 |
T |
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