View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8915_low_1 (Length: 701)

Name: NF8915_low_1
Description: NF8915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8915_low_1
NF8915_low_1
[»] chr5 (1 HSPs)
chr5 (1-690)||(34174676-34175369)


Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 690
Target Start/End: Original strand, 34174676 - 34175369
Alignment:
Q  1 ataatcattctcattcacacattccactga----accttagagtagtatgacacaaaataaaatatatttgactgtacaaattcatgtcttattacaaca 96  Q
    |||||||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  34174676 ataatcattctcattcacacattccactaaccttaccttagagtagtatgacacaaaataaaatatatttgactgtacaaattcatgtcttattattaca 34174775  T
Q  97 agacttgcaattccacgttagatattaccctctctccttcctatttctattcatattcctatttctttctagaaattgactagtattttttctttgatag 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34174776 agacttgcaattccacgttagatattaccctctctccttcctatttctattcatattcctatttctttctagaaattgactagtattttttctttgatag 34174875  T
Q  197 agcgtaaataagtatgaaatagtcttaacttttaagaaataaaattatgtcttgtctagattttgaatttttgacattaatatcaatataaaagaattgt 296  Q
    ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34174876 agcgtaaata----tgaaatagtcttaacttttaagaaataaaattatgtcttgtctagattttgaatttttgacattaatatcaatataaaagaattgt 34174971  T
Q  297 ttctgtnnnnnnnnnttaacgtaaaagaattaatagctcaattagtgtgcgtgataacttaaatttggtactgtatgatatgattactttatttaagatt 396  Q
    ||||||         |||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||| |||||||||||||||||||||||||||    
T  34174972 ttctgtaaaaaaaaattaacgtaaaagaattaatagctcaactagtgcgcgcgataacttaaacttggtactatatgatatgattactttatttaagatt 34175071  T
Q  397 cacttttcattgttgcattttggactagaggcaaagaacaagggag--aataaaaaatagatttaatacttaaagaactccatcaataatgaattattca 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || |||||| | ||||| || |||| ||||||||||||||||||||| ||||    
T  34175072 cacttttcattgttgcattttggactagaggcaaagaacaagggaggaaaaaaaaaaaaaatttagtagttaacgaactccatcaataatgaattgttca 34175171  T
Q  495 aaagattctgaattcgatgatgggatgaaacaattttcgttaaattatatttattttatgaccgaattctaaattatcaaaattatttcttctgaaaact 594  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  34175172 aaagattctgaattcgattatgggatgaaacaattttcattaaattatatttattttataatcgaattctaaattatcaaaattatttcttctgaaaact 34175271  T
Q  595 ggaacttaacacacaca-aaaaataataaaggattattctcaagcaa-ttttaatttaatttgatcggactctgaattgtcaaaagcttaacaccaaa 690  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34175272 ggaacttaacacacacacaaaaataataaaggattattctcaagcaatttttaatttaatttgatcggactctgaattgtcaaaagcttaacaccaaa 34175369  T

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