View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8915_low_11 (Length: 282)

Name: NF8915_low_11
Description: NF8915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8915_low_11
NF8915_low_11
[»] chr7 (4 HSPs)
chr7 (124-282)||(32866801-32866959)
chr7 (11-120)||(42062089-42062198)
chr7 (11-121)||(27923264-27923373)
chr7 (66-113)||(42010691-42010738)
[»] chr1 (9 HSPs)
chr1 (11-120)||(38863428-38863537)
chr1 (11-120)||(37285456-37285564)
chr1 (15-121)||(26733426-26733531)
chr1 (11-113)||(14998509-14998610)
chr1 (24-114)||(50150066-50150156)
chr1 (57-112)||(47215499-47215554)
chr1 (15-114)||(43011612-43011711)
chr1 (15-114)||(46879059-46879157)
chr1 (67-113)||(5056041-5056087)
[»] chr5 (7 HSPs)
chr5 (11-119)||(14136398-14136506)
chr5 (11-120)||(11782160-11782269)
chr5 (11-120)||(27514203-27514311)
chr5 (11-120)||(38695021-38695131)
chr5 (14-111)||(1463734-1463831)
chr5 (11-100)||(40323389-40323478)
chr5 (15-96)||(32772381-32772461)
[»] chr3 (7 HSPs)
chr3 (11-121)||(7944218-7944328)
chr3 (11-120)||(19647621-19647730)
chr3 (11-122)||(40916565-40916675)
chr3 (24-114)||(34020547-34020637)
chr3 (68-114)||(45525835-45525881)
chr3 (15-113)||(49015471-49015568)
chr3 (54-90)||(45526754-45526790)
[»] chr6 (6 HSPs)
chr6 (11-112)||(18058399-18058500)
chr6 (11-120)||(30452797-30452906)
chr6 (11-114)||(7695181-7695284)
chr6 (36-114)||(25049495-25049573)
chr6 (66-113)||(27335454-27335501)
chr6 (66-113)||(27396194-27396241)
[»] chr4 (11 HSPs)
chr4 (11-120)||(33748232-33748341)
chr4 (11-121)||(42057894-42058004)
chr4 (11-120)||(54453862-54453971)
chr4 (15-95)||(37385828-37385907)
chr4 (15-112)||(48513460-48513556)
chr4 (15-113)||(31416525-31416622)
chr4 (15-111)||(52488655-52488750)
chr4 (15-114)||(42478213-42478311)
chr4 (11-44)||(1605948-1605981)
chr4 (66-111)||(29820293-29820338)
chr4 (66-114)||(55862514-55862561)
[»] chr8 (6 HSPs)
chr8 (11-119)||(31664815-31664923)
chr8 (11-122)||(27562591-27562703)
chr8 (11-118)||(35176339-35176446)
chr8 (18-114)||(42146062-42146158)
chr8 (11-114)||(30152399-30152502)
chr8 (66-113)||(32039080-32039127)
[»] scaffold0060 (1 HSPs)
scaffold0060 (11-122)||(60555-60666)
[»] chr2 (8 HSPs)
chr2 (11-121)||(7000443-7000552)
chr2 (18-104)||(42481211-42481296)
chr2 (11-114)||(11761899-11762000)
chr2 (15-114)||(14360106-14360204)
chr2 (15-113)||(34024743-34024840)
chr2 (66-114)||(17033824-17033872)
chr2 (66-114)||(17077554-17077602)
chr2 (66-114)||(17088508-17088556)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 124 - 282
Target Start/End: Complemental strand, 32866959 - 32866801
Alignment:
Q  124 ttggagggtgttttggaatttacatctcccatgacacttttactcattctctctcctactaaaaaatcatttgaaccgaatgatgcatagggnnnnnnnn 223  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||            
T  32866959 ttggagggtgttttggaatttacatctcctatgacacttttactcattctctctactactaaaaaatcatttgaaccgaatgatgcatagggaaaaaaaa 32866860  T
Q  224 gcatttgatagattacataacaaaataaaataatttgagcatacacgtataaaattata 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32866859 gcatttgatagattacataacaaaataaaataatttgagcatacacgtataaaattata 32866801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 42062198 - 42062089
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  42062198 tttgatgtttatagaccataataaaatttggtggattcatatgatctaatggtacaaaaaattagttcatcatagaccaatatttttataggttcatttt 42062099  T
Q  111 atacttcacc 120  Q
     |||||||||    
T  42062098 gtacttcacc 42062089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 27923264 - 27923373
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    ||||||||||||| |||||||||||||||||||| ||  |||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||     
T  27923264 tttggtgtttataaaccatgataaaatttggtgggttcttatgatctaatggtac-aaaaattggtccatcatgaaccaatatttttataggttcattta 27923362  T
Q  111 atacttcacct 121  Q
    |||||| ||||    
T  27923363 atacttgacct 27923373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 42010738 - 42010691
Alignment:
Q  66 aaaaaattggtccatcatagaccaatatttttataggttcattttata 113  Q
    |||||||||||||||||| |||||||||| | || |||||||||||||    
T  42010738 aaaaaattggtccatcatggaccaatattctcatgggttcattttata 42010691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 38863537 - 38863428
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38863537 tttggtgtttatagaccatgataaaatttggtggattcatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 38863438  T
Q  111 atacttcacc 120  Q
    ||||||||||    
T  38863437 atacttcacc 38863428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 37285564 - 37285456
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  37285564 tttggtgtttatagaccatgataaaatttggtggattcatatgatctaatgataccaaaaattggtccatcatggaccaatatttttata-gttcatttt 37285466  T
Q  111 atacttcacc 120  Q
    ||||||||||    
T  37285465 atacttcacc 37285456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 26733426 - 26733531
Alignment:
Q  15 gtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    |||||||||||||||||||||||||||||| || |||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||     
T  26733426 gtgtttatagaccatgataaaatttggtgggttcatataatctaatggtacaaaa-attggtccatcatagaccaatatttttataagttcattttatag 26733524  T
Q  115 ttcacct 121  Q
    |||||||    
T  26733525 ttcacct 26733531  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 14998610 - 14998509
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    ||||||||||| ||| |||||||| |||||  || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14998610 tttggtgtttaaagatcatgataagatttgtagg-tttatatgatctaacggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 14998512  T
Q  111 ata 113  Q
    |||    
T  14998511 ata 14998509  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 50150156 - 50150066
Alignment:
Q  24 gaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    |||||| |||| ||||||||| || ||||||||||| ||||||||||| ||||||||| |||||||||||||| | |||||||||||||||    
T  50150156 gaccataataagatttggtgggttcatatgatctaacggtacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 50150066  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 47215554 - 47215499
Alignment:
Q  57 taatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttat 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47215554 taatggtacaaaaaattggtccatcatggaccaatatttttataggttcattttat 47215499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 43011711 - 43011612
Alignment:
Q  15 gtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    |||||||  |||||| ||||  |||||||| || |||||||| || ||||||||||| ||||||||| |||||||||||||||  |||||||||||||||    
T  43011711 gtgtttaatgaccataataaggtttggtgggttcatatgatccaacggtacaaaaaactggtccatcttagaccaatatttttccaggttcattttatac 43011612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 46879157 - 46879059
Alignment:
Q  15 gtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    ||||||||||||||||||||||||| | ||||| |||| ||||||   |  |||||||| ||||||||| |||||||||||| || ||||||||||||||    
T  46879157 gtgtttatagaccatgataaaatttag-ggattcatataatctaaccattgaaaaaattagtccatcatggaccaatattttcatgggttcattttatac 46879059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 5056041 - 5056087
Alignment:
Q  67 aaaaattggtccatcatagaccaatatttttataggttcattttata 113  Q
    ||||||||||||||||| |||||||||||| || |||||||||||||    
T  5056041 aaaaattggtccatcatggaccaatattttcatgggttcattttata 5056087  T

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Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 14136398 - 14136506
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14136398 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 14136497  T
Q  111 atacttcac 119  Q
    |||||||||    
T  14136498 atacttcac 14136506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 11782160 - 11782269
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11782160 tttgatgtttatagaccatgataaaatttggtgggttcatatgatctaacggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 11782259  T
Q  111 atacttcacc 120  Q
    ||||||||||    
T  11782260 atacttcacc 11782269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 27514203 - 27514311
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27514203 tttggtgtttatagaccatgataaaatttggtgggttcatatgatcta-tggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 27514301  T
Q  111 atacttcacc 120  Q
    ||||||||||    
T  27514302 atacttcacc 27514311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 38695021 - 38695131
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcat-agaccaatatttttataggttcattt 109  Q
    ||||||||||||| |||||||||||||||| | | || ||||||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||    
T  38695021 tttggtgtttataaaccatgataaaatttgataggttcatatgatctaatggtacaaaaaattggtctatcataaaaacaatatttttataggttcattt 38695120  T
Q  110 tatacttcacc 120  Q
    |||||||||||    
T  38695121 tatacttcacc 38695131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 1463734 - 1463831
Alignment:
Q  14 ggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttta 111  Q
    |||||||||||| |||||||||||||||||| || ||||||||||||| ||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  1463734 ggtgtttatagatcatgataaaatttggtgggttcatatgatctaatgatatcaaaaattggtccatcatggaccaatatttttataggttcatttta 1463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 40323389 - 40323478
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttata 100  Q
    |||| ||||||||||||||||||| ||||||||  || |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40323389 tttgatgtttatagaccatgataagatttggtgagttcatataatctaatggtacaaaaaattggtccatcatagaccaatatttttata 40323478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 32772381 - 32772461
Alignment:
Q  15 gtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttt 96  Q
    ||||||||||| ||||||||||||| | || || || | ||||||  ||  |||||||||||||||||||||||||||||||    
T  32772381 gtgtttatagatcatgataaaattttgggg-ttcatctaatctaaccgttgaaaaaattggtccatcatagaccaatatttt 32772461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 7944328 - 7944218
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  7944328 tttgatgtttatagaccatgataaaatttggtggattcatatgatctaatggtacaaaaaattggtccatcatgaaccaatatttttataggttcatttt 7944229  T
Q  111 atacttcacct 121  Q
    |||||||||||    
T  7944228 atacttcacct 7944218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 19647730 - 19647621
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  19647730 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatggtacaaaaatttggtccatcatggaccaatatttttataggttcatttt 19647631  T
Q  111 atacttcacc 120  Q
    ||||||||||    
T  19647630 atacttcacc 19647621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 40916675 - 40916565
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||| |||||||||||||| |||||||||| ||| ||  ||||||||||||||||||||||||| ||||  ||| | ||||| ||||||||||| |||||    
T  40916675 tttgatgtttatagaccataataaaatttgatgggttcttatgatctaatggtacaaaaaattgatccacaataaaacaata-ttttataggtttatttt 40916577  T
Q  111 atacttcaccta 122  Q
    ||||||||||||    
T  40916576 atacttcaccta 40916565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 34020637 - 34020547
Alignment:
Q  24 gaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    |||||| ||||| |||||||| || |||||||  |||||||||||||| ||||||||  || ||||||||||| | | |||||||||||||    
T  34020637 gaccataataaagtttggtgggttcatatgattcaatggtacaaaaaactggtccattttaaaccaatattttcacatgttcattttatac 34020547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 45525881 - 45525835
Alignment:
Q  68 aaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    ||||||||||||| || ||||||||||||||| ||||||||||||||    
T  45525881 aaaattggtccatgatggaccaatatttttatgggttcattttatac 45525835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 49015568 - 49015471
Alignment:
Q  15 gtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttata 113  Q
    ||||||||||| ||||||||||||| | || || || | ||||||  ||  ||||||||||||||||||||||||||||| | | || |||||||||||    
T  49015568 gtgtttatagatcatgataaaattttgagg-ttcatttaatctaaccgttgaaaaaattggtccatcatagaccaatattctcagagattcattttata 49015471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 45526754 - 45526790
Alignment:
Q  54 atctaatggtacaaaaaattggtccatcatagaccaa 90  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  45526754 atctaatggtagaaaaaattggttcatcatagaccaa 45526790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 18058500 - 18058399
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18058500 tttggtgtttatagaccatgataaaatttggtggattcatatgatctaatggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 18058401  T
Q  111 at 112  Q
    ||    
T  18058400 at 18058399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 30452797 - 30452906
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||||||||||||||||||||||||||||  ||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  30452797 tttggtgtttatagaccatgataaaatttaatgggttcatatgatctaatggtacaaaaaattggtccatcatagaccaatattattataggtttatttt 30452896  T
Q  111 atacttcacc 120  Q
    ||||||||||    
T  30452897 atacttcacc 30452906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 7695181 - 7695284
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||||||||||| ||||||||||| |||| |||| || |||||||||||   |  |||| | ||||||||||| ||||||||| || || ||||||||||    
T  7695181 tttggtgtttatggaccatgataagatttagtgggttgatatgatctaagcattgaaaagactggtccatcatcgaccaatatcttgatgggttcatttt 7695280  T
Q  111 atac 114  Q
    ||||    
T  7695281 atac 7695284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 25049573 - 25049495
Alignment:
Q  36 atttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    ||||||||| || |||||||| || |||| ||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  25049573 atttggtgggttcatatgatccaacggtagaaaaaattggtccatcataaaccaatattttcgtgcgttcattttatac 25049495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 27335501 - 27335454
Alignment:
Q  66 aaaaaattggtccatcatagaccaatatttttataggttcattttata 113  Q
    |||||||||||||||||| |||||||||| | || |||||||||||||    
T  27335501 aaaaaattggtccatcatggaccaatattctcatgggttcattttata 27335454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 27396241 - 27396194
Alignment:
Q  66 aaaaaattggtccatcatagaccaatatttttataggttcattttata 113  Q
    |||||||||||||||||| |||||||||| | || |||||||||||||    
T  27396241 aaaaaattggtccatcatggaccaatattctcatgggttcattttata 27396194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 33748232 - 33748341
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  33748232 tttgatgtttatagaccatgataaaatttgatggattcatatgatctaatggtacaaaaaattggtccatcatgaaccaatatttttataggttcatttt 33748331  T
Q  111 atacttcacc 120  Q
    ||||||||||    
T  33748332 atacttcacc 33748341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 42057894 - 42058004
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    ||||||||||||| |||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42057894 tttggtgtttataaaccatgataaaatttggtgggttcttatgatctaatggtacaaaaaattggtccatcataaaccaatatttttataggttcatttt 42057993  T
Q  111 atacttcacct 121  Q
     ||||||||||    
T  42057994 gtacttcacct 42058004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 54453971 - 54453862
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||||| ||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  54453971 tttggtatttatagaccatgataaaatttgatgggttcatatgatctaatggtacaaaaaattgatccatcataaaccaatatttttataggttcatttt 54453872  T
Q  111 atacttcacc 120  Q
    ||||||||||    
T  54453871 atacttcacc 54453862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 37385828 - 37385907
Alignment:
Q  15 gtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatattt 95  Q
    ||||||||||||||||||||||||| | || || |||| |||||||  |  |||||||||||| |||||||||||||||||    
T  37385828 gtgtttatagaccatgataaaatttagggg-ttcatataatctaatcattgaaaaaattggtctatcatagaccaatattt 37385907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 48513460 - 48513556
Alignment:
Q  15 gtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttat 112  Q
    ||||||||||| ||||||||||||| | || || || | ||||||  ||  |||||||||||||||||| |||||||||| | || ||||||||||||    
T  48513460 gtgtttatagatcatgataaaattttgggg-ttcatctaatctaaccgttgaaaaaattggtccatcatggaccaatattctcatgggttcattttat 48513556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 31416622 - 31416525
Alignment:
Q  15 gtgtttatagaccatgataaaatttggtggattt-atatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttata 113  Q
    ||||||||||| |||||||||||||  |||| || || | ||||||  ||  |||||||||||||||||| |||||||||| | || |||||||||||||    
T  31416622 gtgtttatagatcatgataaaattt--tggagttcatgtaatctaaccgttaaaaaaattggtccatcatggaccaatattctcatgggttcattttata 31416525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 52488750 - 52488655
Alignment:
Q  15 gtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttta 111  Q
    ||||||||||| ||||||||||||| | || || || | ||||||  ||  |||||||||||||||| |||||||||||| | |||| |||||||||    
T  52488750 gtgtttatagatcatgataaaattttgggg-ttcatctaatctaaccgttgaaaaaattggtccatcttagaccaatattctcatagattcatttta 52488655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 42478213 - 42478311
Alignment:
Q  15 gtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    |||| ||||||||||||||||||||   || ||||||| |||||||  |  ||||||||| ||||||||  | ||||||||| || ||||||||||||||    
T  42478213 gtgtgtatagaccatgataaaatttaaggg-tttatataatctaatcattgaaaaaattgatccatcatgaatcaatattttcatgggttcattttatac 42478311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 1605981 - 1605948
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtgg 44  Q
    ||||||||||||||| ||||||||||||||||||    
T  1605981 tttggtgtttatagatcatgataaaatttggtgg 1605948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 29820293 - 29820338
Alignment:
Q  66 aaaaaattggtccatcatagaccaatatttttataggttcatttta 111  Q
    ||||||||||||||||||| ||||||||| | || |||||||||||    
T  29820293 aaaaaattggtccatcataaaccaatattctcatgggttcatttta 29820338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 55862561 - 55862514
Alignment:
Q  66 aaaaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    |||||||||||||||||| |||||||||||| || ||||||| ||||||    
T  55862561 aaaaaattggtccatcatggaccaatattttgat-ggttcatattatac 55862514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 31664815 - 31664923
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  31664815 tttggtgtttatagaccatgataaaatttggtgagttcatatgatctaatggtacaaaaaattgttccatcatggaccaatatttttataggttcatttt 31664914  T
Q  111 atacttcac 119  Q
    |||||||||    
T  31664915 atacttcac 31664923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 27562591 - 27562703
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtac-aaaaaattggtccatcatagaccaatatttttataggttcattt 109  Q
    |||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  27562591 tttgatgtttatagaccatgataaaatttggtgggttcatatgatctaatggtacaaaaaaattagtccatcatagaccaatatttttataggttcattt 27562690  T
Q  110 tatacttcaccta 122  Q
    |||||||| ||||    
T  27562691 tatacttccccta 27562703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 35176446 - 35176339
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||||||||||| |||||||||||||||||||||||| |||| ||||||||| | |||||||| |||||||||||||||||||||||||||||| |||||    
T  35176446 tttggtgtttatggaccatgataaaatttggtggattcatataatctaatgggataaaaaattagtccatcatagaccaatatttttataggttgatttt 35176347  T
Q  111 atacttca 118  Q
    ||||||||    
T  35176346 atacttca 35176339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 42146158 - 42146062
Alignment:
Q  18 tttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    |||||| |||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42146158 tttataaaccacgataaaatttggtgggttcatatgatctaatggtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 42146062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 30152399 - 30152502
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||||||||||| ||||||| ||| |||| |||| || |||| ||||||   |  |||| ||||||||||||| ||||||||| || || ||||||||||    
T  30152399 tttggtgtttatggaccatggtaagatttagtgggttgatataatctaaacattgaaaagattggtccatcatggaccaatatcttgatgggttcatttt 30152498  T
Q  111 atac 114  Q
    ||||    
T  30152499 atac 30152502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 32039080 - 32039127
Alignment:
Q  66 aaaaaattggtccatcatagaccaatatttttataggttcattttata 113  Q
    ||||||||| ||||||||| ||||||||||| || |||||||||||||    
T  32039080 aaaaaattgatccatcataaaccaatattttcatgggttcattttata 32039127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 60666 - 60555
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    |||||||||||||||| ||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  60666 tttggtgtttatagacaatgataaaatttggtgggttcatataatctaatggtacaaaaaattggtccatcatagattaatatttttataggttcatttt 60567  T
Q  111 atacttcaccta 122  Q
    ||||||||||||    
T  60566 atacttcaccta 60555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 7000443 - 7000552
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    ||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||    
T  7000443 tttggtgtttatagaccataataaaatttggtagattcatataatctaatggtacaaaaaattggtccatcatagaccaatattttcatatgttca-ttt 7000541  T
Q  111 atacttcacct 121  Q
    |||||||||||    
T  7000542 atacttcacct 7000552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 42481296 - 42481211
Alignment:
Q  18 tttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggtt 104  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  42481296 tttatagaccatgataaaatttggtggattcatatgatctaatggta-aaaaaattggtccatcatggaccaatatttttataggtt 42481211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 11762000 - 11761899
Alignment:
Q  11 tttggtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 110  Q
    ||||||||||||||| ||| |||| ||||| ||  |||||||||| |||   || |||||||||||||||||| ||||| |||||| |||| || ||| |    
T  11762000 tttggtgtttatagatcataataagatttgatg--tttatatgatgtaacattaaaaaaaattggtccatcatggaccattattttcatagcttgattct 11761903  T
Q  111 atac 114  Q
    ||||    
T  11761902 atac 11761899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 14360204 - 14360106
Alignment:
Q  15 gtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    ||||||||||| |||| ||| |||| |||| || |||| ||||||  ||  |||||||||||| || || |||||||||||| || ||||||||||||||    
T  14360204 gtgtttatagatcatggtaagatttagtgg-ttcatataatctaaccgttgaaaaaattggtctatgatggaccaatattttcatgggttcattttatac 14360106  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 34024840 - 34024743
Alignment:
Q  15 gtgtttatagaccatgataaaatttggtggatttatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttata 113  Q
    ||||||||||| |||||||| |||| | ||||| |||| ||||||   |  |||| |||||||||| |||||| |||||||| || |||||||||||||    
T  34024840 gtgtttatagatcatgataagatttag-ggattcatataatctaactattgaaaatattggtccataatagacaaatattttcatgggttcattttata 34024743  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 17033824 - 17033872
Alignment:
Q  66 aaaaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    |||||||||||||||||| ||| ||| ||||||  ||||||||||||||    
T  17033824 aaaaaattggtccatcatggacaaatttttttagtggttcattttatac 17033872  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 17077554 - 17077602
Alignment:
Q  66 aaaaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    |||||||||||||||||| ||| ||| ||||||  ||||||||||||||    
T  17077554 aaaaaattggtccatcatggacaaatttttttagtggttcattttatac 17077602  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 17088508 - 17088556
Alignment:
Q  66 aaaaaattggtccatcatagaccaatatttttataggttcattttatac 114  Q
    |||||||||||||||||| ||| ||| ||||||  ||||||||||||||    
T  17088508 aaaaaattggtccatcatggacaaatttttttagtggttcattttatac 17088556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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