View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8915_low_12 (Length: 266)
Name: NF8915_low_12
Description: NF8915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8915_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 12554019 - 12554274
Alignment:
| Q |
11 |
cagagagatgatcttacaccatgcccttttgacccaaggagagagtatgccccagacgctgagcccaaaacttagatctctgcaatttatgcctcagcaa |
110 |
Q |
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| T |
12554019 |
cagagagatgatcttacaccatgcccttttgacccaaggagagagtatgccccagacactgagcccaaaacttagatctctgcaatttatgcctcagcaa |
12554118 |
T |
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| Q |
111 |
gtcaactgtagaagcactgccatgcagaatttcaggggtaggcgaatccaaaacgaaatctagtaacttactgaacttctggagttgagcttcatatcta |
210 |
Q |
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| T |
12554119 |
gtcaactgtagaagcactgccatgcagaatttcaggggtaggcgaatccaaaacgaaatctagtaacttactgaacttctggagttgagcttcatatcta |
12554218 |
T |
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| Q |
211 |
caattaccaacacgagaaaaataaaagtgttcacgttaattacaacaattgaacta |
266 |
Q |
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| T |
12554219 |
caattaccaacacgagaaaaataaaagtgttcacgttaattacaacaattgaacta |
12554274 |
T |
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