View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8915_low_2 (Length: 568)
Name: NF8915_low_2
Description: NF8915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8915_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 33525173 - 33525485
Alignment:
| Q |
19 |
gtggtcaagccggtagtcctatgttatggactaaaaacaagtcaatgggatccgaaaattcggaaccaacctctccaaaagttacctgtgccggacaaat |
118 |
Q |
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| T |
33525173 |
gtggtcaagccggtagtcctatgttatggactaaaaacaagtcaatgggatctgaaaattcggaaccaacctctccaaaagttacctgtgccggacaaat |
33525272 |
T |
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| Q |
119 |
caaaatgaggcctaaaaattctgcttgtaggaactggcagtcggtgatggaagagatagagaaaattcataacaacaagaagcnnnnnnngcgtctcaat |
218 |
Q |
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| T |
33525273 |
caaaatgaggcctaaaaattctgcttgtaggagctggcaatcggtgatggaagagatagagaaaattcataacgacaagaagcaaaaaaagcgtctcaat |
33525372 |
T |
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| Q |
219 |
tgggccgaatctctcggtttcaagaaagagattatgcaattcttcacttgtttacgagccatacgctttgaccttcgttgctttggatccttctctggaa |
318 |
Q |
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| T |
33525373 |
tgggccgaatctctcggtttcaagaaagagattatgcaattcttcacttgtttacgagccatacgctttgaccttcgttgctttggatccttctctggaa |
33525472 |
T |
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| Q |
319 |
ccgatatctcaac |
331 |
Q |
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| T |
33525473 |
ccgatatcacaac |
33525485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 388 - 477
Target Start/End: Original strand, 33525542 - 33525631
Alignment:
| Q |
388 |
tgtattataacgatcatgttggtgtagaagagactcatcgtgacagcgaatcatcaagagctgtgttctcaaaatggttcatggttatgc |
477 |
Q |
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| T |
33525542 |
tgtattataacgatcatgttggtgtagaagagactcatcgcgacagcgaatcatcaagagctgtgttctcaaaatggttcatggtgatgc |
33525631 |
T |
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