View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8915_low_4 (Length: 549)
Name: NF8915_low_4
Description: NF8915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8915_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 12 - 549
Target Start/End: Complemental strand, 30336464 - 30335927
Alignment:
| Q |
12 |
acatcaagaaagatgcaataccagatgatatggattggataaaatataatctccatcttgattcaaccctccctcttttccgctgcaaaagaagaaaaca |
111 |
Q |
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| T |
30336464 |
acatcaagaaagatgcaataccagatgatatggattggataaaatataatctccatcttgattcaaccctccctcttttccgctgcaaaagaagaaaaca |
30336365 |
T |
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| Q |
112 |
aaaagaaattccccagtgcattagatattatatacttcctagttctacttcaattgtaaatacattatggccatagcaagacatgtaaatgcagtaaggt |
211 |
Q |
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| T |
30336364 |
aaaagaaattccccagtgcattagatattatatacttcctagttctacttcaattgtaaatacattatggccatagcaagacatgtaaatgcagtaaggt |
30336265 |
T |
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| Q |
212 |
aatatataagcttcagatgcatattgttcacctgttggctaccattcgaagttgtctaaaaggccatatatatacaccttctattttgatttgggcaccc |
311 |
Q |
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| T |
30336264 |
aatatataagcttcagatgcatattgttcacctgttggctaccattcgaagttgtctaaaaggccatatatatacaccttctattttgatttgggcaccc |
30336165 |
T |
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| Q |
312 |
ccaacattgtattcgttgtcgaacacatcgtggaatataacaaccccctaataaaaacacgaaaaagagaaataaaactttagaagagtaacaatatgtt |
411 |
Q |
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| T |
30336164 |
ccaacattgtattcgttgtcgaacacatcgtggaatataacaaccccctaataaaaacacgaaaaagagaaataaaactttagaagagtaacaatatgtt |
30336065 |
T |
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| Q |
412 |
cagttgagatgttacacagtctaaactttcatttgcagtgagttaatttagagagcnnnnnnnctgttggatttaaatttgtaatgaaaaaataagtact |
511 |
Q |
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| T |
30336064 |
cagttgagatgttacacaatctaaactttcatttgcagtgagttaatttagagagctttttttctgttggatttaaatttgtaatgaaaaaagaagttct |
30335965 |
T |
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| Q |
512 |
tcgttcaattagagccaattgcttaggaagtgaaaaaa |
549 |
Q |
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| T |
30335964 |
tggtgcaagtagaaccaattgcttaggaagtgaaaaaa |
30335927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 33020227 - 33020416
Alignment:
| Q |
12 |
acatcaagaaagatgcaataccagatgatatggattggataaaatataatctccatcttgattcaaccctccctcttttccgctgcaaaagaagaaaaca |
111 |
Q |
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| T |
33020227 |
acatcaagaaagatgcaataccagatgatgcaaatttgataaaatataatctccat--------aacactccct-ttttccactacaaaaaaa--aaaca |
33020315 |
T |
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| Q |
112 |
aaaagaaattccccagtgcattagatattatatacttcctagttctacttcaattgtaaatacattatggccat---agcaagacatgtaaatgcagtaa |
208 |
Q |
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||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |||| |||||| | || ||||| ||||||||||||| ||| |
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| T |
33020316 |
aaaagaaattccccagtatattagatattatatacttcctattactacttcaattgtcaatagattatgactatcggagcaaaacatgtaaatgcaataa |
33020415 |
T |
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