View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8915_low_7 (Length: 487)

Name: NF8915_low_7
Description: NF8915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8915_low_7
NF8915_low_7
[»] chr2 (4 HSPs)
chr2 (11-469)||(37713386-37713843)
chr2 (213-283)||(2681821-2681891)
chr2 (213-283)||(2704312-2704382)
chr2 (213-302)||(2690524-2690613)
[»] chr4 (3 HSPs)
chr4 (213-283)||(36366670-36366740)
chr4 (211-302)||(36290783-36290874)
chr4 (252-302)||(31708581-31708631)
[»] chr3 (6 HSPs)
chr3 (213-283)||(3103480-3103550)
chr3 (213-283)||(5829875-5829945)
chr3 (213-301)||(5488387-5488475)
chr3 (244-286)||(13855371-13855413)
chr3 (213-321)||(3123011-3123119)
chr3 (213-301)||(5501202-5501290)
[»] scaffold0090 (1 HSPs)
scaffold0090 (243-287)||(8082-8126)
[»] chr8 (2 HSPs)
chr8 (216-283)||(15703512-15703579)
chr8 (213-283)||(15805176-15805246)
[»] chr7 (2 HSPs)
chr7 (211-302)||(20243799-20243890)
chr7 (261-302)||(20231777-20231818)


Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Complemental strand, 37713843 - 37713386
Alignment:
Q  11 tttggtgttgccaaaatatttggggggaaagagactgaagcaagcacccaaagagtaatgggaacctagtaagttctttatgcaaatgttattttaaaag 110  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37713843 tttggtcttgccaaaatatttggggggaaagagactggagcaagcacccaaagagtaatgggaacctagtaagttctttatacaaatgttattttaaaag 37713744  T
Q  111 tttaattcacaattcccaagttttgtttatttattcaaatatttaccaggccaagatgtttttacatgcttgctaaaatgctacatgtaacaannnnnnn 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||           
T  37713743 tttaattcacaattcccaagttttgtttatttattcaaatattcactaggccaagatgtttttacatgcttgctaaaatgctacatgtaacaatttttt- 37713645  T
Q  211 gtagtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttggcgtagtcctactagagattctcagtgg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37713644 gtagtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttggcgtagtcctactagagattctcagtgg 37713545  T
Q  311 taaaaggaacacgggtttctttcgatcacaacaaatttctagcctcttgggatatgtatgtttcttttaatcactcttgtaattacttttctcttttgac 410  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  37713544 taaaaagaacacgggtttctttcgatcacaacaaatttctagcctcttgggatatgtatgtttctttgaatcactcttgtaattacttttctcttttgat 37713445  T
Q  411 gaagaatggtgatatattgactttaaataattttcatgtgcattgtattaggcatggag 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37713444 gaagaatggtgatatattgactttaaataattttcatgtgcattgtattaggcatggag 37713386  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 2681891 - 2681821
Alignment:
Q  213 agtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttgg 283  Q
    ||||| ||||||||||| || |||||| |||| |||  ||| ||| | |||||||||||||||||||||||    
T  2681891 agtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttgg 2681821  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 2704382 - 2704312
Alignment:
Q  213 agtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttgg 283  Q
    |||||||||||||||||||| || ||  |||| || || ||||||   |||||||||||||||||||||||    
T  2704382 agtggatatatgtctccagaatacgcaatggaggggttgttttcagagaaatcagatgtttttagctttgg 2704312  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 302
Target Start/End: Complemental strand, 2690613 - 2690524
Alignment:
Q  213 agtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttggcgtagtcctactagagatt 302  Q
    ||||| ||||||||||  ||||||||| || | || || |||||| |||| |||||||| | ||| ||||||||| | ||||||||||||    
T  2690613 agtggttatatgtctcatgagtatgctatgcaaggcttattttcagtcaagtcagatgtatatagttttggcgtattgctactagagatt 2690524  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 36366670 - 36366740
Alignment:
Q  213 agtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttgg 283  Q
    ||||| ||||||||||||||||||||| |||||||| |||| ||| | ||||| |||||||| || |||||    
T  36366670 agtggctatatgtctccagagtatgctatggatggaatcttctcagtgaaatctgatgttttcagttttgg 36366740  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 36290783 - 36290874
Alignment:
Q  211 gtagtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttggcgtagtcctactagagatt 302  Q
    |||||||||||||||||||||| || ||  |||| ||  | |||||| ||||||| ||||| | ||| ||||||||| | ||||||||||||    
T  36290783 gtagtggatatatgtctccagaatacgcaatggagggtctattttcagtcaaatctgatgtatatagttttggcgtacttctactagagatt 36290874  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 31708581 - 31708631
Alignment:
Q  252 ttttcaatcaaatcagatgtttttagctttggcgtagtcctactagagatt 302  Q
    ||||||||||||||||||||||| |||||||| ||  | ||||||||||||    
T  31708581 ttttcaatcaaatcagatgttttcagctttggtgttttactactagagatt 31708631  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 3103480 - 3103550
Alignment:
Q  213 agtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttgg 283  Q
    |||||||||||| ||||||| |||||| |||| ||||| |||||| | || ||||||||||| ||||||||    
T  3103480 agtggatatatggctccagaatatgctatggaaggattgttttcagtaaagtcagatgttttcagctttgg 3103550  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 5829875 - 5829945
Alignment:
Q  213 agtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttgg 283  Q
    |||||||||||| |||||||||||||  || |||| || || ||||| ||||| |||||||||||||||||    
T  5829875 agtggatatatgcctccagagtatgcagtgcatgggtttttctcaataaaatctgatgtttttagctttgg 5829945  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 5488475 - 5488387
Alignment:
Q  213 agtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttggcgtagtcctactagagat 301  Q
    |||||||||||| ||||||| |||||   |||||||| ||| ||||| ||||| |||||||| |||||||| || || ||||| |||||    
T  5488475 agtggatatatgcctccagaatatgcagcggatggatccttctcaataaaatctgatgttttcagctttggagttgttctacttgagat 5488387  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 13855371 - 13855413
Alignment:
Q  244 atggattcttttcaatcaaatcagatgtttttagctttggcgt 286  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||    
T  13855371 atggattattttctatcaaatcagatgtatttagctttggcgt 13855413  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 321
Target Start/End: Original strand, 3123011 - 3123119
Alignment:
Q  213 agtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttggcgtagtcctactagagattctcagtggta 312  Q
    |||||||| ||| ||||||| |||||| | || || || |||||| | || ||||||||||| |||||||||||  |  | ||||||||  ||||||| |    
T  3123011 agtggatacatggctccagaatatgctatcgaaggcttgttttcagtgaagtcagatgttttcagctttggcgttcttttgctagagatcatcagtggaa 3123110  T
Q  313 aaaggaaca 321  Q
    |||||||||    
T  3123111 aaaggaaca 3123119  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 5501290 - 5501202
Alignment:
Q  213 agtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttggcgtagtcctactagagat 301  Q
    |||||||||||| ||||||| |||||   |||||||| ||| ||||| ||||| ||||||| ||| ||||| || || ||||| |||||    
T  5501290 agtggatatatgcctccagaatatgcagcggatggatccttctcaataaaatctgatgtttatagttttggagttgttctacttgagat 5501202  T

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Target: scaffold0090 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 8126 - 8082
Alignment:
Q  243 gatggattcttttcaatcaaatcagatgtttttagctttggcgta 287  Q
    |||||||| ||||| |||||||||||||| |||||||||||||||    
T  8126 gatggattattttctatcaaatcagatgtatttagctttggcgta 8082  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 15703579 - 15703512
Alignment:
Q  216 ggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttgg 283  Q
    ||||| ||| ||||||| |||||| ||| |||||| |||||| | ||||| |||||||||||||||||    
T  15703579 ggatacatggctccagaatatgctatggctggattattttcagtgaaatctgatgtttttagctttgg 15703512  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 15805246 - 15805176
Alignment:
Q  213 agtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttgg 283  Q
    |||||||| ||| ||||||| |||||| ||| ||| || |||||| | ||||| |||||||||||||||||    
T  15805246 agtggatacatggctccagaatatgctatggctggcttattttcagtgaaatccgatgtttttagctttgg 15805176  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 20243799 - 20243890
Alignment:
Q  211 gtagtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttggcgtagtcctactagagatt 302  Q
    ||||||| || |||||||| || |||||  || | ||||| ||||||   ||||||||||||||||||||||| ||| | ||||||||||||    
T  20243799 gtagtggctacatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgctactagagatt 20243890  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 20231777 - 20231818
Alignment:
Q  261 aaatcagatgtttttagctttggcgtagtcctactagagatt 302  Q
    ||||||||||||||||||||||| ||| | ||||||||||||    
T  20231777 aaatcagatgtttttagctttggtgtattgctactagagatt 20231818  T

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