View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8915_low_8 (Length: 473)
Name: NF8915_low_8
Description: NF8915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8915_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 35127914 - 35127458
Alignment:
| Q |
1 |
aatgtgataattccggctcgaactcctcgttcacagccctttgcccataatcattatccaatatgacactttcctcgctaacatcaaccatttcattgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
35127914 |
aatgtgataattccggctcgaactcctcgttcacagccctttgcccataatcattatccaatatcacactttcctcactaacatcaaccatttcattgtc |
35127815 |
T |
|
| Q |
101 |
tctctttgcttcatcctcttcattcaaatctgtaatatcactatcttgcttgaaacgcacgtcttcaagtagcagtggaccctgtccttgataagtagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35127814 |
tctctttgcttcatcctcttcattcaaatctgtaatatcactatcttgcttgaaacgcacgtcttcaagtagcagtggaccctgtccttgataagtagga |
35127715 |
T |
|
| Q |
201 |
ctaggctgagggagcaacttactcattaaattctgagtacaactatggctaactaagaacaaagcacaaggcatggaaactacaagaccaatagcagaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35127714 |
ctaggctgagggagcaacttactcattaaattctgagtacaactatggctaactaagaacaaagcacaaggcatggaaactacaagaccaatagcagaag |
35127615 |
T |
|
| Q |
301 |
caactacaaaacctggaagaataataggaacagaagtggctacaaaaccaaaaactaatatcttctttcccatattgagtcccttcttgaacacatagtt |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35127614 |
caactacaaaacctggaagaacaataggaacagaagtggctacaaaaccaaaaactaatatcttctttcccatattgagtcccttcttgaacacatagtt |
35127515 |
T |
|
| Q |
401 |
cactttgctaccattattggtattaggttcataccagtgttgactagtactagtaat |
457 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
35127514 |
cactttgctaccattattggtattaggttcaaaccagtgttgactagtactagtaat |
35127458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 367
Target Start/End: Original strand, 26779140 - 26779344
Alignment:
| Q |
163 |
cttcaagtagcagtggaccctgtccttgataagtaggactaggctgagggagcaacttactcattaaattctgagtacaactatggctaactaagaacaa |
262 |
Q |
| |
|
||||||||||||| ||||||||||| ||| |||||| ||||||| ||| |||||||||||| |||||| ||||| | | || ||| ||||| || |
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| T |
26779140 |
cttcaagtagcaggggaccctgtccctgaggagtaggcctaggcttaggcagcaacttactcgttaaatcatgagtgtatgaacggaaaaccaagaagaa |
26779239 |
T |
|
| Q |
263 |
agcacaaggcatggaaactacaagaccaatagcagaagcaactacaaaacctggaagaataataggaacagaagtggctacaaaaccaaaaactaatatc |
362 |
Q |
| |
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|||| ||| || |||||| |||| ||| |||||||||||||||||||||||| ||||| || ||| ||||||| ||| ||||||||| |||||| || |
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|
| T |
26779240 |
agcataagacagagaaactgcaaggccattagcagaagcaactacaaaacctgaaagaacaagaggggcagaagttgcttcaaaaccaaccactaatttc |
26779339 |
T |
|
| Q |
363 |
ttctt |
367 |
Q |
| |
|
||||| |
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|
| T |
26779340 |
ttctt |
26779344 |
T |
|
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