View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8916_high_3 (Length: 418)
Name: NF8916_high_3
Description: NF8916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8916_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 44575009 - 44575409
Alignment:
| Q |
1 |
gtatgatttaaatcttgaccacctaaccaaggtgttttccctttatgtgatgttgctttatgaacaatgttgacaattaaggaaccagtgtagtttgcaa |
100 |
Q |
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| T |
44575009 |
gtatgatttaaatcttgaccacctaaccaaggtgttttccctttatgtgatgttgctttatgaacaatgttgacaattaaggaaccagtgtagtttgcaa |
44575108 |
T |
|
| Q |
101 |
tggacaggctcaaaaagaagatggcaccagaaacagtcctcatagactccggcacttgaagggtaaagaattccattatagcaacagcagcaaaggcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575109 |
tggacaggctcaaaaagaagatggcaccagaaacagtcctcatagactccggcacttgaagggtaaagaattccattatagcaacagcagcaaaggcttc |
44575208 |
T |
|
| Q |
201 |
atttaaaccggacagcgcaaactgcggcaagagcaaaccaaagctcacaggcgaaataaacgaattgtgtttcaaagccgagtcacgacgctttttctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575209 |
atttaaaccggacagcgcaaactgcggcaagagcaaaccaaagctcacaggcgaaataaacgaattgtgtttcaaagccgagtcacgacgctttttctca |
44575308 |
T |
|
| Q |
301 |
ataactgcagctaccaacatgcataggatagataataatatcccaattctgattctgcatcccatgctcattcttcttgtagcccttttattgattatcc |
400 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575309 |
acaactgcagctaccaacatgcataggatagataataatatcccaattctgattctgcatcccatgctcattcttcttgtagcccttttattgattatcc |
44575408 |
T |
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| Q |
401 |
t |
401 |
Q |
| |
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| |
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| T |
44575409 |
t |
44575409 |
T |
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