View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8916_high_4 (Length: 302)
Name: NF8916_high_4
Description: NF8916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8916_high_4 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 232432 - 232131
Alignment:
| Q |
1 |
ttctcagtgtcctactgagctcatcaaagtcaaaaactggacctgttgagctatcggtatccataggatctgatatgattggaaggttaatctgctccag |
100 |
Q |
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| T |
232432 |
ttctcagtgtcctactgagctcatcaaagtcaaaaactggacctgttgagctatcggtatccataggatctgatatgattggaaggttaatctgctccag |
232333 |
T |
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| Q |
101 |
cttacacttttcttgtatttcctgctttttccccattaacttctcaatctgttcctcctttgacttaatctgatgattaagtttggataagtttgttttg |
200 |
Q |
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| T |
232332 |
cttacacttttcttgtatttcctgctttttccccattaacttctcaatctgttcctcctttgacttaatctgatgattaagtttggataagtttgttttg |
232233 |
T |
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| Q |
201 |
gctgcagaagccctcttcttccgttcctgaatttccttttcacaatcccctgaattgtatttcctcttttcatattcgcccttcaacatactgatctctt |
300 |
Q |
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| T |
232232 |
gctgcagaagccctcttcttcagttcctgaatttccttttcacaatcctctgacttggatttccacttttcatattcacccttcaactgactgatctctt |
232133 |
T |
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| Q |
301 |
ta |
302 |
Q |
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| T |
232132 |
ta |
232131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 30592081 - 30591925
Alignment:
| Q |
6 |
agtgtcctactgagctcatcaaagtcaaaaactggacc---tgttgagctatcggtatccataggatctgatatgattggaaggttaatctgctccagct |
102 |
Q |
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| T |
30592081 |
agtgttctactgagcttatcaaagtcaaaaactggacccggtgttgaagtatcagtatccatgggatctggtatgattggaaggctaatttgctctagtt |
30591982 |
T |
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| Q |
103 |
tacacttttcttgtatttcctgctttttccccattaacttctcaatctgttcctcct |
159 |
Q |
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| T |
30591981 |
cacacttttctacgatttcctgcttttgcccaatcaactgctcaatctgtgcctcct |
30591925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 30591830 - 30591757
Alignment:
| Q |
175 |
gattaagtttggataagtttgttttggctgcagaagccctcttcttccgttcctgaatttccttttcacaatcc |
248 |
Q |
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| T |
30591830 |
gattaagtttggctaagcttgttgtggctgcagaagccttcttcttccattcctggatttccttttcacgatcc |
30591757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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