View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8916_low_1 (Length: 785)

Name: NF8916_low_1
Description: NF8916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8916_low_1
NF8916_low_1
[»] chr4 (22 HSPs)
chr4 (207-772)||(1227931-1228503)
chr4 (1-134)||(1228576-1228709)
chr4 (680-767)||(9242917-9243003)
chr4 (714-769)||(31823044-31823099)
chr4 (714-772)||(33161827-33161883)
chr4 (710-771)||(21713159-21713220)
chr4 (714-770)||(53265990-53266044)
chr4 (680-768)||(27761127-27761214)
chr4 (713-769)||(42039049-42039105)
chr4 (714-772)||(12572565-12572621)
chr4 (713-772)||(32935719-32935778)
chr4 (714-772)||(36174403-36174459)
chr4 (710-769)||(38131470-38131529)
chr4 (714-772)||(47043812-47043868)
chr4 (680-767)||(49065549-49065635)
chr4 (610-668)||(53265816-53265875)
chr4 (582-663)||(33164505-33164587)
chr4 (680-766)||(42118977-42119063)
chr4 (616-673)||(47043979-47044037)
chr4 (696-769)||(43502280-43502353)
chr4 (696-769)||(51242829-51242902)
chr4 (680-769)||(52789398-52789487)
[»] scaffold0217 (1 HSPs)
scaffold0217 (680-767)||(25601-25688)
[»] chr1 (16 HSPs)
chr1 (583-673)||(39650193-39650284)
chr1 (700-767)||(20447188-20447255)
chr1 (700-767)||(20532951-20533018)
chr1 (713-769)||(41871767-41871823)
chr1 (682-766)||(1671324-1671408)
chr1 (713-769)||(46178675-46178731)
chr1 (713-769)||(48566792-48566848)
chr1 (714-772)||(39650396-39650452)
chr1 (680-772)||(21482908-21482999)
chr1 (709-772)||(50065656-50065717)
chr1 (713-772)||(3660170-3660229)
chr1 (713-767)||(30858532-30858586)
chr1 (710-771)||(39222734-39222795)
chr1 (714-770)||(47485587-47485641)
chr1 (680-769)||(49597195-49597283)
chr1 (612-660)||(50069237-50069286)
[»] chr7 (14 HSPs)
chr7 (680-767)||(8260882-8260969)
chr7 (652-740)||(30362750-30362838)
chr7 (585-673)||(30362867-30362956)
chr7 (586-662)||(20379669-20379746)
chr7 (713-768)||(41219372-41219427)
chr7 (586-658)||(2355485-2355558)
chr7 (713-768)||(18239404-18239459)
chr7 (706-772)||(26502254-26502318)
chr7 (706-772)||(26590396-26590460)
chr7 (732-771)||(39476582-39476621)
chr7 (635-673)||(1537236-1537274)
chr7 (586-671)||(26502423-26502509)
chr7 (586-671)||(26590205-26590291)
chr7 (586-658)||(28138759-28138832)
[»] chr2 (12 HSPs)
chr2 (652-736)||(37891739-37891823)
chr2 (713-769)||(29908537-29908593)
chr2 (714-772)||(12967418-12967474)
chr2 (713-772)||(29132628-29132687)
chr2 (714-772)||(22495897-22495953)
chr2 (713-767)||(6903714-6903767)
chr2 (592-668)||(11712964-11713041)
chr2 (585-673)||(18394960-18395049)
chr2 (586-666)||(31133179-31133260)
chr2 (629-673)||(37891666-37891710)
chr2 (613-649)||(20686816-20686853)
chr2 (680-769)||(34619896-34619985)
[»] scaffold0753 (1 HSPs)
scaffold0753 (680-767)||(4001-4088)
[»] chr8 (7 HSPs)
chr8 (713-769)||(34471589-34471645)
chr8 (696-769)||(2766858-2766931)
chr8 (594-673)||(37686624-37686704)
chr8 (584-673)||(4640785-4640875)
chr8 (713-769)||(3964043-3964099)
chr8 (732-771)||(43693559-43693598)
chr8 (576-668)||(33220782-33220875)
[»] scaffold1455 (1 HSPs)
scaffold1455 (706-772)||(198-262)
[»] chr5 (12 HSPs)
chr5 (713-772)||(10532827-10532886)
chr5 (584-673)||(1974154-1974244)
chr5 (713-769)||(28784766-28784822)
chr5 (713-771)||(6427318-6427376)
chr5 (713-769)||(41758708-41758764)
chr5 (680-768)||(43147422-43147510)
chr5 (714-772)||(3461407-3461463)
chr5 (714-772)||(19401823-19401879)
chr5 (680-769)||(1081883-1081972)
chr5 (715-772)||(1172929-1172986)
chr5 (586-631)||(7336117-7336162)
chr5 (696-769)||(34954067-34954140)
[»] chr3 (16 HSPs)
chr3 (652-740)||(47068150-47068238)
chr3 (714-772)||(2325435-2325491)
chr3 (678-769)||(25574827-25574917)
chr3 (714-769)||(39415381-39415436)
chr3 (714-770)||(42947563-42947617)
chr3 (714-770)||(44833623-44833677)
chr3 (713-769)||(6755711-6755767)
chr3 (680-764)||(49303211-49303295)
chr3 (586-668)||(42947375-42947458)
chr3 (585-663)||(53827661-53827740)
chr3 (713-769)||(48086877-48086933)
chr3 (585-663)||(6162682-6162761)
chr3 (714-769)||(6463031-6463086)
chr3 (584-631)||(54525800-54525847)
chr3 (612-673)||(42993592-42993654)
chr3 (714-770)||(53824490-53824544)
[»] chr6 (9 HSPs)
chr6 (713-767)||(2419794-2419848)
chr6 (586-673)||(14153354-14153442)
chr6 (714-772)||(14153552-14153608)
chr6 (680-769)||(13312589-13312677)
chr6 (615-673)||(16444297-16444357)
chr6 (713-769)||(319259-319315)
chr6 (584-663)||(35060895-35060975)
chr6 (714-772)||(16444465-16444521)
chr6 (612-673)||(14830418-14830480)
[»] scaffold1063 (1 HSPs)
scaffold1063 (584-663)||(1473-1553)
[»] scaffold1763 (1 HSPs)
scaffold1763 (586-631)||(397-442)
[»] scaffold0051 (1 HSPs)
scaffold0051 (680-769)||(20096-20185)


Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 207 - 772
Target Start/End: Complemental strand, 1228503 - 1227931
Alignment:
Q  207 atgtggtagtgcagttggtagttgagttgggaatgtttcaaaaatgggaaa-gtgaagattaagttgaattctcaacacatgt--atatgttcacctttg 303  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||  |||||||||||||||    
T  1228503 atgtggtagtgcagttggtagttgagttgggaatgattcaaaaatgggaaaagtgaagattaaggtgaattctcaacacatgtgtatatgttcacctttg 1228404  T
Q  304 gaccatgatttctacctgtat----tgtaggggttgtgtaattgcaagtatgaccctaggtgaaaatcctactttggttcaattatgtgatgaacataat 399  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1228403 gaccatgatttctacctgtatatattgtaggggttgtgtaattgcaagtatgaccctaggtgaaaatcctactttggttcaattatgtgatgaacataat 1228304  T
Q  400 atgtacatgccaatgttgactcatattgggaggctagtaaaggagccatgtctatatagtagacaatgggtaatggaatatgtgaatatctcaaaaaata 499  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1228303 atgtacatgccaatgttgactcatattaggaggctagtaaaggagccatgtctatatagtagacaatgggtaatggaatatgtgaatatctcaaaaaata 1228204  T
Q  500 ctcacaaagaatgccatggataagcccatcctattgaatgtaagcccatatcaaactaacccattttagcactcttaatagttcttgaattatgctcttt 599  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || | |||    
T  1228203 ctcacaaagaatgccatggataagcccatcctattgcatgtaagcccatatcaaactaacccattttagcactcctaatggttcttgaattctgttattt 1228104  T
Q  600 acctaaattatttcgctcattcctaaagtaaagtccaaaatgcccctgcgcaacttaacatgcgctagtgtattctaagtgtgacttaaggcacctacca 699  Q
    ||| ||||| ||||||||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  1228103 acccaaattgtttcgctcattcccaaggtaaagttcaaaatgcctctgcgcaacttaacatgcgctagtgtattctaagtgtgacttaagtcacccacca 1228004  T
Q  700 ctgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1228003 ttgagccttagcacgagttaactcacactagttggccggtggtcagaactgaagaacaaacgttttttggtct 1227931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 1228709 - 1228576
Alignment:
Q  1 tacgtatacagttgggaagagtgaaggaagggagatagttatataaatatatgactaagtcatcatccaataaaaaaggcattaattaaattatttacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1228709 tacgtatacagttgggaagagtgaaggaagggagatagttatataaatatatgactaagtcatcatccaataaaaaaggcattaattaaattatttacaa 1228610  T
Q  101 atagtggaggagagtgaaaaagtaggtctaaatc 134  Q
    ||||||||||||||||||||||||||||||||||    
T  1228609 atagtggaggagagtgaaaaagtaggtctaaatc 1228576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 680 - 767
Target Start/End: Complemental strand, 9243003 - 9242917
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgtttttt 767  Q
    |||||||||| |||  |||||||||||||  | ||||||||||||| | ||||||||||| || ||||||||||||||||||||||||    
T  9243003 gtgacttaagtcacgcaccactgagccttc-cgcgagttaactcacgcaagttggccggtagtcagaactgaagaacaaacgtttttt 9242917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 714 - 769
Target Start/End: Original strand, 31823044 - 31823099
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    |||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||    
T  31823044 gagttaactcacgcacgttggccggtggtcagaactgaagaacaaacgttttttgg 31823099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 714 - 772
Target Start/End: Original strand, 33161827 - 33161883
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||    
T  33161827 gagttaactcacgctagttggccggtgc--agaactgaagaacaaacgttttttggtct 33161883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 710 - 771
Target Start/End: Complemental strand, 21713220 - 21713159
Alignment:
Q  710 gcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtc 771  Q
    |||||||||||||||| | |  ||||||||||| ||| ||||||||||||||||||||||||    
T  21713220 gcacgagttaactcacgcaacatggccggtggtcagagctgaagaacaaacgttttttggtc 21713159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 714 - 770
Target Start/End: Original strand, 53265990 - 53266044
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggt 770  Q
    |||||||||||| ||||||||||||||   |||||||||||||||||||||||||||    
T  53265990 gagttaactcacgctagttggccggtgc--agaactgaagaacaaacgttttttggt 53266044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 768
Target Start/End: Complemental strand, 27761214 - 27761127
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttg 768  Q
    |||||||||| |||  |||||| |||||  || |||||||||||||||  |||||||||| || |||||| ||||||||||||||||||    
T  27761214 gtgacttaagtcacgcaccact-agcctatgcgcgagttaactcacacacgttggccggtagtcagaactcaagaacaaacgttttttg 27761127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 769
Target Start/End: Original strand, 42039049 - 42039105
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||| |  ||||||||||||| |||||||||||||| |||||||||||    
T  42039049 cgagttaactcacgcacgttggccggtggtcagaactgaagaacagacgttttttgg 42039105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 714 - 772
Target Start/End: Original strand, 12572565 - 12572621
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||||||||| | ||||||||||||   |||||||||||||||||||||||||||||    
T  12572565 gagttaactcacgccagttggccggtgc--agaactgaagaacaaacgttttttggtct 12572621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 32935719 - 32935778
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    ||||||||||||| |  ||||||||||||  ||| |||||||||||||||||||||||||    
T  32935719 cgagttaactcacgcacgttggccggtggccagagctgaagaacaaacgttttttggtct 32935778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 714 - 772
Target Start/End: Complemental strand, 36174459 - 36174403
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||||||||||||||||||| ||||   |||||||||||| ||||||||||||||||    
T  36174459 gagttaactcacactagttggcaggtgc--agaactgaagaagaaacgttttttggtct 36174403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 710 - 769
Target Start/End: Original strand, 38131470 - 38131529
Alignment:
Q  710 gcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    |||||||||||||||| |  ||| ||||||||| | ||||||||||||||||||||||||    
T  38131470 gcacgagttaactcacgcacgttagccggtggtcacaactgaagaacaaacgttttttgg 38131529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 714 - 772
Target Start/End: Complemental strand, 47043868 - 47043812
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||||||| | | ||||||||||||   |||||||||||||||||||||||||||||    
T  47043868 gagttaactcgcgccagttggccggtgc--agaactgaagaacaaacgttttttggtct 47043812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 767
Target Start/End: Complemental strand, 49065635 - 49065549
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgtttttt 767  Q
    |||||||||| |||  ||||||| ||||  || ||||||||||||| |   |||||||||||| ||| ||||||||||||||||||||    
T  49065635 gtgacttaagtcacgcaccactg-gcctatgcgcgagttaactcacgcaccttggccggtggtcagagctgaagaacaaacgtttttt 49065549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 668
Target Start/End: Original strand, 53265816 - 53265875
Alignment:
Q  610 tttcgctcattcctaaagt-aaagtccaaaatgcccctgcgcaacttaacatgcgctagt 668  Q
    ||||||||||||||||||| ||| |||||||||| ||| ||||  |||||||||||||||    
T  53265816 tttcgctcattcctaaagtaaaattccaaaatgctcctacgcatgttaacatgcgctagt 53265875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 582 - 663
Target Start/End: Complemental strand, 33164587 - 33164505
Alignment:
Q  582 tcttgaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcg 663  Q
    ||||||||| ||||| ||||| ||||  || |||||||||  |||||||| ||||||||||||||| ||||  ||||||||||    
T  33164587 tcttgaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacgcatgttaacatgcg 33164505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 680 - 766
Target Start/End: Original strand, 42118977 - 42119063
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttt 766  Q
    |||||||||| |||  ||||||||||||   | ||||||||||  | | |||||||||||||| | |||||||| ||||||||||||    
T  42118977 gtgacttaagtcacgcaccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgttttt 42119063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 616 - 673
Target Start/End: Complemental strand, 47044037 - 47043979
Alignment:
Q  616 tcattcctaaagtaaag-tccaaaatgcccctgcgcaacttaacatgcgctagtgtatt 673  Q
    ||||||||||||||||  | |||||||||||||||||  |||||||| |||||||||||    
T  47044037 tcattcctaaagtaaatattcaaaatgcccctgcgcatgttaacatgtgctagtgtatt 47043979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 696 - 769
Target Start/End: Complemental strand, 43502353 - 43502280
Alignment:
Q  696 accactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||  || ||||||||||  | | |||||||||||||| | |||||||| |||||||||| ||||    
T  43502353 accactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttgg 43502280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 696 - 769
Target Start/End: Original strand, 51242829 - 51242902
Alignment:
Q  696 accactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||  || ||||||||||  | | |||||||||||||| | |||||||| | |||||||||||||    
T  51242829 accactgagcctatgcgcgagttaacttgcgcaagttggccggtggtcaaaactgaagcataaacgttttttgg 51242902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 769
Target Start/End: Original strand, 52789398 - 52789487
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    |||||||||| |||  ||||||||||||  || ||||||||||  | | |||||| ||||||| | |||||||| |||||||||| ||||    
T  52789398 gtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttgg 52789487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 680 - 767
Target Start/End: Original strand, 25601 - 25688
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgtttttt 767  Q
    |||||||||||||| ||||||  |||||| || ||||||||||||| | |||||||||||||| ||||||||||||||||||||||||    
T  25601 gtgacttaaggcacgtaccacccagcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgaagaacaaacgtttttt 25688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 9e-23; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 583 - 673
Target Start/End: Original strand, 39650193 - 39650284
Alignment:
Q  583 cttgaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcgctagtgtatt 673  Q
    |||||||| ||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||| ||||  ||||||||||||||||||||    
T  39650193 cttgaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgctagtgtatt 39650284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 700 - 767
Target Start/End: Original strand, 20447188 - 20447255
Alignment:
Q  700 ctgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgtttttt 767  Q
    ||||||||| || ||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||    
T  20447188 ctgagccttcgcgcgagttaactcacgctagttggtcggtggtcagaactgaagaacaaacttttttt 20447255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 700 - 767
Target Start/End: Original strand, 20532951 - 20533018
Alignment:
Q  700 ctgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgtttttt 767  Q
    ||||||||| || ||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||    
T  20532951 ctgagccttcgcgcgagttaactcacgctagttggtcggtggtcagaactgaagaacaaacttttttt 20533018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 713 - 769
Target Start/End: Original strand, 41871767 - 41871823
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||    
T  41871767 cgagttaactcacgcacgttggccggtggtaagaactgaagaacaaacgttttttgg 41871823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 682 - 766
Target Start/End: Complemental strand, 1671408 - 1671324
Alignment:
Q  682 gacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttt 766  Q
    |||||||| |||  ||||||||||||  || ||||||||| ||| | |||||| ||||||| | |||||||||||||||||||||    
T  1671408 gacttaagtcacgaaccactgagcctctgcgcgagttaacgcacgcaagttggtcggtggtcaaaactgaagaacaaacgttttt 1671324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 769
Target Start/End: Original strand, 46178675 - 46178731
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||| |  |||| |||||||| ||||||||||||||||||||||||||    
T  46178675 cgagttaactcacgcatgttgaccggtggtcagaactgaagaacaaacgttttttgg 46178731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 769
Target Start/End: Original strand, 48566792 - 48566848
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||| |  |||||| |||||| ||||||||||||||||||||||||||    
T  48566792 cgagttaactcacgcacgttggctggtggtcagaactgaagaacaaacgttttttgg 48566848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 714 - 772
Target Start/End: Original strand, 39650396 - 39650452
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||||||||  ||||||||||||||   |||||||||||||||||||||||||||||    
T  39650396 gagttaactcatgctagttggccggtgc--agaactgaagaacaaacgttttttggtct 39650452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 680 - 772
Target Start/End: Original strand, 21482908 - 21482999
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||||||| |||  |||||| |||||  |||||||||||||||| |  |||||||| |||| ||| ||||||||||||| |||||| ||||    
T  21482908 gtgacttaagtcacgcaccact-agcctatgcacgagttaactcacgcacgttggccgatggtcagagctgaagaacaaactttttttagtct 21482999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 709 - 772
Target Start/End: Original strand, 50065656 - 50065717
Alignment:
Q  709 agcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||| |||||||||||| |  |||||||||||   |||||||||||||||||||||||||||||    
T  50065656 agcatgagttaactcacgcaggttggccggtgc--agaactgaagaacaaacgttttttggtct 50065717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 3660229 - 3660170
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    ||||||||||||| |   |||||||||||| ||| |||||||||||||||||||| ||||    
T  3660229 cgagttaactcacgcaccttggccggtggtcagagctgaagaacaaacgtttttttgtct 3660170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 713 - 767
Target Start/End: Original strand, 30858532 - 30858586
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgtttttt 767  Q
    ||||||||||| | | |||||||||||||| | | ||||||||||||||||||||    
T  30858532 cgagttaactcgcgcaagttggccggtggtcaaagctgaagaacaaacgtttttt 30858586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 771
Target Start/End: Original strand, 39222734 - 39222795
Alignment:
Q  710 gcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtc 771  Q
    |||||||||||||||| |    ||| ||||||| ||| ||||||||||||||||||||||||    
T  39222734 gcacgagttaactcacgcaccatggtcggtggtcagagctgaagaacaaacgttttttggtc 39222795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 770
Target Start/End: Original strand, 47485587 - 47485641
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggt 770  Q
    |||||||||| ||| ||||||||||||   ||||||||||||||| |||||||||||    
T  47485587 gagttaactcgcaccagttggccggtgc--agaactgaagaacaaccgttttttggt 47485641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 769
Target Start/End: Original strand, 49597195 - 49597283
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    |||||||||| |||  ||||||| ||||  || ||||||||||||| |  ||||| ||||||| |||||| ||||||||||| |||||||    
T  49597195 gtgacttaagtcacgcaccactg-gcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactaaagaacaaacgatttttgg 49597283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 660
Target Start/End: Complemental strand, 50069286 - 50069237
Alignment:
Q  612 tcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacat 660  Q
    ||||||||||| |||||||| ||||||||||||||||||||  |||||||    
T  50069286 tcgctcattcccaaagtaaatgtccaaaatgcccctgcgcatgttaacat 50069237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 680 - 767
Target Start/End: Original strand, 8260882 - 8260969
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgtttttt 767  Q
    |||||||||| |||  ||||||||||||| || ||||||||||||| | |||||||||||||| |||||||| |||||||||||||||    
T  8260882 gtgacttaagtcacgcaccactgagcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgatgaacaaacgtttttt 8260969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 652 - 740
Target Start/End: Complemental strand, 30362838 - 30362750
Alignment:
Q  652 acttaacatgcgctagtgtattctaagtgtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtg 740  Q
    |||||| ||||||||||||||| | || |||||||||| |||  |||||||||||||||| ||||||||||| | |||||||| |||||    
T  30362838 acttaagatgcgctagtgtattatgagcgtgacttaagtcacgcaccactgagccttagcgcgagttaactcgcgctagttggtcggtg 30362750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 585 - 673
Target Start/End: Complemental strand, 30362956 - 30362867
Alignment:
Q  585 tgaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcgctagtgtatt 673  Q
    |||||| |||||||||  |||||  |||||||||||| ||||||||| || |||||||| | |||||||||||||||| |||||||||||    
T  30362956 tgaattctgctctttatttaaatcgtttcgctcattcttaaagtaaaagttcaaaatgctcatgcgcaacttaacatgtgctagtgtatt 30362867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 586 - 662
Target Start/End: Complemental strand, 20379746 - 20379669
Alignment:
Q  586 gaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgc 662  Q
    ||||||||||| ||| ||||||  || |||||||||| |||||||| ||||||||||||||| |||||||||| ||||    
T  20379746 gaattatgctcattatctaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcaacttaatatgc 20379669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 713 - 768
Target Start/End: Complemental strand, 41219427 - 41219372
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttg 768  Q
    ||||||||||||| |  |||||| |||||| |||||||||||||||||||||||||    
T  41219427 cgagttaactcacgcacgttggctggtggtcagaactgaagaacaaacgttttttg 41219372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 658
Target Start/End: Original strand, 2355485 - 2355558
Alignment:
Q  586 gaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaac 658  Q
    |||||||||||||||||  |||  |||||||||||||||||||||| |||  ||||||| |||| |||||||||    
T  2355485 gaattatgctctttaccccaatcgtttcgctcattcctaaagtaaatgtcacaaatgcctctgcacaacttaac 2355558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 713 - 768
Target Start/End: Complemental strand, 18239459 - 18239404
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttg 768  Q
    |||||||||| || |  ||||| ||||||| |||||||||||||||||||||||||    
T  18239459 cgagttaactaacgcacgttggtcggtggtcagaactgaagaacaaacgttttttg 18239404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 772
Target Start/End: Complemental strand, 26502318 - 26502254
Alignment:
Q  706 cttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||| ||||||||||||  ||| |||||||| |   |||||||||||||||||||||||||||||    
T  26502318 cttagcgcgagttaactcatgctacttggccggggc--agaactgaagaacaaacgttttttggtct 26502254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 772
Target Start/End: Original strand, 26590396 - 26590460
Alignment:
Q  706 cttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||| ||||||||||||  ||| |||||||| |   |||||||||||||||||||||||||||||    
T  26590396 cttagcgcgagttaactcatgctacttggccggggc--agaactgaagaacaaacgttttttggtct 26590460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 732 - 771
Target Start/End: Original strand, 39476582 - 39476621
Alignment:
Q  732 tggccggtggttagaactgaagaacaaacgttttttggtc 771  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  39476582 tggccggtggtcagagctgaagaacaaacgttttttggtc 39476621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 635 - 673
Target Start/End: Complemental strand, 1537274 - 1537236
Alignment:
Q  635 caaaatgcccctgcgcaacttaacatgcgctagtgtatt 673  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  1537274 caaaatgcccctgcgcatgttaacatgcgctagtgtatt 1537236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 671
Target Start/End: Complemental strand, 26502509 - 26502423
Alignment:
Q  586 gaattatgctctttacctaaattatttcgctcattcctaaagt-aaagtccaaaatgcccctgcgcaacttaacatgcgctagtgta 671  Q
    ||||||||||| ||| ||||||  ||||||||||||  ||||| |||||||||||||| ||| | ||  | ||||||||||||||||    
T  26502509 gaattatgctccttatctaaatggtttcgctcattctcaaagtaaaagtccaaaatgcgcctacacatttcaacatgcgctagtgta 26502423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 671
Target Start/End: Original strand, 26590205 - 26590291
Alignment:
Q  586 gaattatgctctttacctaaattatttcgctcattcctaaagt-aaagtccaaaatgcccctgcgcaacttaacatgcgctagtgta 671  Q
    ||||||||||| ||| ||||||  ||||||||||||  ||||| |||||||||||||| ||| | ||  | ||||||||||||||||    
T  26590205 gaattatgctccttatctaaatggtttcgctcattctcaaagtaaaagtccaaaatgcgcctacacatttcaacatgcgctagtgta 26590291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 658
Target Start/End: Original strand, 28138759 - 28138832
Alignment:
Q  586 gaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaac 658  Q
    ||||| ||||||||||| |||| |||| ||||||||| |||||||| | ||||||| ||||||||  |||||||    
T  28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctgcgtgacttaac 28138832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 652 - 736
Target Start/End: Original strand, 37891739 - 37891823
Alignment:
Q  652 acttaacatgcgctagtgtattctaagtgtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggcc 736  Q
    ||||||||||| |||||||||| | || |||||||||| |||  |||||||||||||||| ||||||||||||| ||||||||||    
T  37891739 acttaacatgcactagtgtattatgagcgtgacttaagtcacgcaccactgagccttagcgcgagttaactcacgctagttggcc 37891823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 713 - 769
Target Start/End: Original strand, 29908537 - 29908593
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||    
T  29908537 cgagttaactcatgcacgttggccggtggttagaactgaagaacaaacgttttttgg 29908593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 714 - 772
Target Start/End: Original strand, 12967418 - 12967474
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||||||||| ||||||||||||||  ||||| ||||||||||||||||||||||||    
T  12967418 gagttaactcacgctagttggccggtg--tagaattgaagaacaaacgttttttggtct 12967474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 29132687 - 29132628
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    ||||||||||||| |  ||||||||||||| ||| |||||||||||||||||||||||||    
T  29132687 cgagttaactcacgcacgttggccggtggtcagagctgaagaacaaacgttttttggtct 29132628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 714 - 772
Target Start/End: Complemental strand, 22495953 - 22495897
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||||||| | | ||||||||||||  ||||||||||||||||||||||||||||||    
T  22495953 gagttaactcgcgccagttggccggtg--tagaactgaagaacaaacgttttttggtct 22495897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 713 - 767
Target Start/End: Complemental strand, 6903767 - 6903714
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgtttttt 767  Q
    ||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||    
T  6903767 cgagttaactcacac-atttggccggtggtcagaactgaagaacaaacatttttt 6903714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 668
Target Start/End: Original strand, 11712964 - 11713041
Alignment:
Q  592 tgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcgctagt 668  Q
    ||||| ||||||| ||  ||||||||||||| |||||||| ||||||||||||||| || |  |||||||||||||||    
T  11712964 tgctcattacctagatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacgtatgttaacatgcgctagt 11713041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 673
Target Start/End: Complemental strand, 18395049 - 18394960
Alignment:
Q  585 tgaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcgctagtgtatt 673  Q
    |||||| ||||| ||||| |||  || ||||||||||| |||||||  |||||||||||| ||| |||  ||||||||||||||||||||    
T  18395049 tgaattctgctcattacccaaacaatatcgctcattcccaaagtaattgtccaaaatgcctctgtgcatgttaacatgcgctagtgtatt 18394960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 666
Target Start/End: Original strand, 31133179 - 31133260
Alignment:
Q  586 gaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcgcta 666  Q
    ||||| ||||||||||| |||| ||||||||||||  ||||||||| |||  |||||||||| | ||| |||||||||||||    
T  31133179 gaattctgctctttacccaaatcatttcgctcatttttaaagtaaatgtcataaatgcccctacacaagttaacatgcgcta 31133260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 629 - 673
Target Start/End: Original strand, 37891666 - 37891710
Alignment:
Q  629 aaagtccaaaatgcccctgcgcaacttaacatgcgctagtgtatt 673  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||    
T  37891666 aaagtctaaaatgcccctgcacaacttaacatgtgctagtgtatt 37891710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 649
Target Start/End: Complemental strand, 20686853 - 20686816
Alignment:
Q  613 cgctcattcctaaagtaaa-gtccaaaatgcccctgcg 649  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20686853 cgctcattcctaaagtaaaagtccaaaatgcccctgcg 20686816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 769
Target Start/End: Complemental strand, 34619985 - 34619896
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    |||||||||| |||  || |||||||||  || ||||||||||  ||| |||||||||||| | | |||||||| |||||||||| ||||    
T  34619985 gtgacttaagtcacgcactactgagcctatgcgcgagttaacttgcacaagttggccggtgataaaaactgaagcacaaacgtttcttgg 34619896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 680 - 767
Target Start/End: Original strand, 4001 - 4088
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgtttttt 767  Q
    |||||||||| |||  |||||||||||||  | ||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||    
T  4001 gtgacttaagtcacgcaccactgagcctttccgcgagttaactcacgcaagttgaccggtggtcagaactgaagaacaaacgtttttt 4088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 713 - 769
Target Start/End: Complemental strand, 34471645 - 34471589
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  34471645 cgagttaactcacgcacgttggccggtggttagaactgaagaacaaacgttttttgg 34471589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 696 - 769
Target Start/End: Complemental strand, 2766931 - 2766858
Alignment:
Q  696 accactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    |||||||| |||  |||||||||||| ||| | |||||||| ||||| | ||||||||||||||||||||||||    
T  2766931 accactgaacctctgcacgagttaacgcacgcaagttggccagtggtcaaaactgaagaacaaacgttttttgg 2766858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 673
Target Start/End: Original strand, 37686624 - 37686704
Alignment:
Q  594 ctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcgctagtgtatt 673  Q
    ||||||||| ||||  ||||| ||||||| |||||||| ||| |||||| || ||||||||||||||||| ||||||||||    
T  37686624 ctctttacccaaatcgtttcgttcattcccaaagtaaaagtctaaaatggccttgcgcaacttaacatgcactagtgtatt 37686704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 673
Target Start/End: Complemental strand, 4640875 - 4640785
Alignment:
Q  584 ttgaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcgctagtgtatt 673  Q
    ||||||| ||||| ||||| ||| | | ||||||||| | |||||||| | | ||||||||||| | ||||||||||||||||||||||||    
T  4640875 ttgaattctgctcattacccaaactgtatcgctcatttccaaagtaaaagactaaaatgcccctacacaacttaacatgcgctagtgtatt 4640785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 769
Target Start/End: Original strand, 3964043 - 3964099
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||| | |||||||||||||||||| || ||||||| | |||||||||    
T  3964043 cgagttaactcacgcaagttggccggtggttagagctcaagaacacatgttttttgg 3964099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 732 - 771
Target Start/End: Complemental strand, 43693598 - 43693559
Alignment:
Q  732 tggccggtggttagaactgaagaacaaacgttttttggtc 771  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  43693598 tggccggtggtcagagctgaagaacaaacgttttttggtc 43693559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 668
Target Start/End: Complemental strand, 33220875 - 33220782
Alignment:
Q  576 aatagttcttgaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcgctagt 668  Q
    |||| ||| |||||| ||||| ||||| ||||  |||| |||||||| |||||||| || |||||||||||| ||||  |||||||||| ||||    
T  33220875 aatatttcatgaattctgctcattacccaaatggtttcactcattcccaaagtaaaagttcaaaatgcccctacgcatgttaacatgcgttagt 33220782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1455 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 706 - 772
Target Start/End: Complemental strand, 262 - 198
Alignment:
Q  706 cttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||    
T  262 cttagcgcgagttaactcacactagttggccggtg--cagaactgaagaacaaacgttttttagtct 198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 10532827 - 10532886
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    ||||||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||    
T  10532827 cgagttaactcacgcaagttggccggtggtcagagctgaagaacaaacgttttttggtct 10532886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 673
Target Start/End: Original strand, 1974154 - 1974244
Alignment:
Q  584 ttgaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcgctagtgtatt 673  Q
    ||||||||||||| ||||| | ||  | ||||||||||| |||||||| ||||||||||| | ||||||  ||||||||||||||||||||    
T  1974154 ttgaattatgctcattacccagatagtatcgctcattcccaaagtaaatgtccaaaatgctcttgcgcatgttaacatgcgctagtgtatt 1974244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 769
Target Start/End: Complemental strand, 28784822 - 28784766
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||| |  ||||| ||||||| ||||||||||||||||||||||||||    
T  28784822 cgagttaactcacgcacgttggtcggtggtcagaactgaagaacaaacgttttttgg 28784766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 713 - 771
Target Start/End: Original strand, 6427318 - 6427376
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtc 771  Q
    ||||||||||||| |   |||||||||| ||||| ||||||||||||||||||||||||    
T  6427318 cgagttaactcacgcaccttggccggtgattagagctgaagaacaaacgttttttggtc 6427376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 769
Target Start/End: Complemental strand, 41758764 - 41758708
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||  |  |||||| |||||| ||||||||||||||||||||||||||    
T  41758764 cgagttaactcatgcacgttggctggtggtcagaactgaagaacaaacgttttttgg 41758708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 680 - 768
Target Start/End: Complemental strand, 43147510 - 43147422
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttg 768  Q
    |||||||||| |||  ||||||||||||   ||||||||||||| | | |||||||||||||| | ||||||| ||||||  |||||||    
T  43147510 gtgacttaagtcacgcaccactgagcctctacacgagttaactcgcgcaagttggccggtggtaaaaactgaaaaacaaatattttttg 43147422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 714 - 772
Target Start/End: Complemental strand, 3461463 - 3461407
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||||||||| | ||||||||||||   |||||| ||||||||||||||||||||||    
T  3461463 gagttaactcacgccagttggccggtgc--agaactaaagaacaaacgttttttggtct 3461407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 714 - 772
Target Start/End: Complemental strand, 19401879 - 19401823
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||||||||||||||||||||||||   ||||||||| ||||||  |||||||||||    
T  19401879 gagttaactcacactagttggccggtg--cagaactgaaaaacaaatattttttggtct 19401823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 769
Target Start/End: Complemental strand, 1081972 - 1081883
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    |||||||||| |||  ||||||||||||  || ||||||||||  | | ||||| |||||||| | |||||||| |||||||||| ||||    
T  1081972 gtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaacgtttcttgg 1081883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 715 - 772
Target Start/End: Complemental strand, 1172986 - 1172929
Alignment:
Q  715 agttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    ||||||||||| |   |||| || |||||||| |||||||||||||||||||||||||    
T  1172986 agttaactcacgcaccttggtcgatggttagagctgaagaacaaacgttttttggtct 1172929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 7336162 - 7336117
Alignment:
Q  586 gaattatgctctttacctaaattatttcgctcattcctaaagtaaa 631  Q
    ||||||||||||||||||||||  ||| ||||||| ||||||||||    
T  7336162 gaattatgctctttacctaaatagttttgctcatttctaaagtaaa 7336117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 696 - 769
Target Start/End: Original strand, 34954067 - 34954140
Alignment:
Q  696 accactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||  || ||||||||||  ||| ||||||| |||||| | |||||||| |||||||||| ||||    
T  34954067 accactgagcctatgcgcgagttaacttgcacaagttggctggtggtaaaaactgaagcacaaacgtttcttgg 34954140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 652 - 740
Target Start/End: Complemental strand, 47068238 - 47068150
Alignment:
Q  652 acttaacatgcgctagtgtattctaagtgtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtg 740  Q
    |||||||||||||||||||||| | || |||||||||| |||  |||||| |||  |||| ||||||||||||  ||||||||||||||    
T  47068238 acttaacatgcgctagtgtattatgagcgtgacttaagtcacgcaccacttagcactagcgcgagttaactcatgctagttggccggtg 47068150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 714 - 772
Target Start/End: Complemental strand, 2325491 - 2325435
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||    
T  2325491 gagttaactcacgctagttggccggtgc--agaactgaagaacaaacgttttttggtct 2325435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 678 - 769
Target Start/End: Original strand, 25574827 - 25574917
Alignment:
Q  678 gtgtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    |||||||||||| |||  ||||||| ||||  || ||||||||||||| |  ||||| ||||||| ||||||||||||||||||||||||||    
T  25574827 gtgtgacttaagtcacgcaccactg-gcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactgaagaacaaacgttttttgg 25574917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 714 - 769
Target Start/End: Original strand, 39415381 - 39415436
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    |||||||||||| |  |||||||| |||||||||||||||||||||||||||||||    
T  39415381 gagttaactcacgcacgttggccgatggttagaactgaagaacaaacgttttttgg 39415436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 714 - 770
Target Start/End: Original strand, 42947563 - 42947617
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggt 770  Q
    |||||||||||| ||||||||||||||   |||||||||||||||||||||||||||    
T  42947563 gagttaactcacgctagttggccggtgc--agaactgaagaacaaacgttttttggt 42947617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 714 - 770
Target Start/End: Original strand, 44833623 - 44833677
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggt 770  Q
    |||||||||||| ||||||||||||||   |||||||||||||||||||||||||||    
T  44833623 gagttaactcacgctagttggccggtgc--agaactgaagaacaaacgttttttggt 44833677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 769
Target Start/End: Complemental strand, 6755767 - 6755711
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||| | |||||||||||||||||| || ||||||| |||||||||||    
T  6755767 cgagttaactcacgcaagttggccggtggttagagctcaagaacacacgttttttgg 6755711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 764
Target Start/End: Original strand, 49303211 - 49303295
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttt 764  Q
    |||||||||| |||  ||||||||||||  || ||||||||||| | | |||||||||||||| | |||||||| ||||||||||    
T  49303211 gtgacttaagtcacacaccactgagcctctgcgcgagttaactcgcgcaagttggccggtggtaaaaactgaagcacaaacgttt 49303295  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 586 - 668
Target Start/End: Original strand, 42947375 - 42947458
Alignment:
Q  586 gaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcgctagt 668  Q
    ||||| ||||| |||||||||| ||||| |||||||  |||||||| ||||||||||| ||| ||||  |||||||||||||||    
T  42947375 gaattctgctcattacctaaatgatttcactcattctcaaagtaaaagtccaaaatgctcctacgcatgttaacatgcgctagt 42947458  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 585 - 663
Target Start/End: Complemental strand, 53827740 - 53827661
Alignment:
Q  585 tgaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcg 663  Q
    |||||| ||||| ||||||||||  | ||||||||||| |||||||| ||||||||||||||| ||||  ||||||||||    
T  53827740 tgaattctgctcattacctaaatagtatcgctcattcccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcg 53827661  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 769
Target Start/End: Original strand, 48086877 - 48086933
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||| |  ||||||||||||| ||||||||  ||||||||||||||||    
T  48086877 cgagttaactcacgcacgttggccggtggtcagaactgactaacaaacgttttttgg 48086933  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 663
Target Start/End: Complemental strand, 6162761 - 6162682
Alignment:
Q  585 tgaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcg 663  Q
    |||||| ||||| ||||| ||||  || |||||||||| |||||||| ||||||||||||||| ||||  ||||||||||    
T  6162761 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 6162682  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 714 - 769
Target Start/End: Original strand, 6463031 - 6463086
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    |||||||||||| | |||||||||||||||| | || ||||||||| |||||||||    
T  6463031 gagttaactcacgcaagttggccggtggttaaagctcaagaacaaatgttttttgg 6463086  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 631
Target Start/End: Original strand, 54525800 - 54525847
Alignment:
Q  584 ttgaattatgctctttacctaaattatttcgctcattcctaaagtaaa 631  Q
    |||||||||||||||||||||||||  |||||||||| | ||||||||    
T  54525800 ttgaattatgctctttacctaaattgattcgctcatttccaaagtaaa 54525847  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 673
Target Start/End: Original strand, 42993592 - 42993654
Alignment:
Q  612 tcgctcattcctaaagtaaagt-ccaaaatgcccctgcgcaacttaacatgcgctagtgtatt 673  Q
    ||||||||||| |||||||| | || ||||||||||||| |  ||||||||||||||||||||    
T  42993592 tcgctcattcccaaagtaaatttcctaaatgcccctgcgtatgttaacatgcgctagtgtatt 42993654  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 770
Target Start/End: Original strand, 53824490 - 53824544
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggt 770  Q
    |||||||||| | | ||||||||||||   |||||||||||||||||||||||||||    
T  53824490 gagttaactcgcgccagttggccggtgc--agaactgaagaacaaacgttttttggt 53824544  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 713 - 767
Target Start/End: Complemental strand, 2419848 - 2419794
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgtttttt 767  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||||| ||||||    
T  2419848 cgagttaactcacgcaagttggccggtggtcagaactgaagaacaaacatttttt 2419794  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 586 - 673
Target Start/End: Original strand, 14153354 - 14153442
Alignment:
Q  586 gaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcgctagtgtatt 673  Q
    ||||| ||||| ||||| |||| |||| ||||||||| |||||||| | ||||||| ||||| ||||  ||||||||||||||||||||    
T  14153354 gaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaacatgcgctagtgtatt 14153442  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 714 - 772
Target Start/End: Original strand, 14153552 - 14153608
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||||||| | ||||||||||||||   |||||||||||||||||||||||||||||    
T  14153552 gagttaactcgcgctagttggccggtgc--agaactgaagaacaaacgttttttggtct 14153608  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 769
Target Start/End: Original strand, 13312589 - 13312677
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    |||||||||| |||  ||||||| ||||  ||||||||||||||||    |||||||| |||| ||||||||||||||||| ||||||||    
T  13312589 gtgacttaagtcacgaaccactg-gcctgggcacgagttaactcacgtacgttggccgatggtcagaactgaagaacaaacattttttgg 13312677  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 673
Target Start/End: Original strand, 16444297 - 16444357
Alignment:
Q  615 ctcattcctaaagtaaagt--ccaaaatgcccctgcgcaacttaacatgcgctagtgtatt 673  Q
    |||||| |||||||||| |  ||||||||||||||||||  ||||||||||||||||||||    
T  16444297 ctcatttctaaagtaaaatatccaaaatgcccctgcgcatgttaacatgcgctagtgtatt 16444357  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 769
Target Start/End: Original strand, 319259 - 319315
Alignment:
Q  713 cgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    ||||||||||||| |  |||||  |||||| ||||||||||||||||||||||||||    
T  319259 cgagttaactcacgcacgttgggtggtggtcagaactgaagaacaaacgttttttgg 319315  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 663
Target Start/End: Complemental strand, 35060975 - 35060895
Alignment:
Q  584 ttgaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcg 663  Q
    ||||||| ||||| ||||| |||| ||| |||||||| | |||||||| ||||||||||||||| ||||  ||||||||||    
T  35060975 ttgaattctgctcattacccaaatgattccgctcatttccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcg 35060895  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 714 - 772
Target Start/End: Original strand, 16444465 - 16444521
Alignment:
Q  714 gagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttggtct 772  Q
    |||||||||||| ||||||||||||||   ||||||||||||||||| ||||| |||||    
T  16444465 gagttaactcacgctagttggccggtg--cagaactgaagaacaaacatttttcggtct 16444521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 673
Target Start/End: Original strand, 14830418 - 14830480
Alignment:
Q  612 tcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcgctagtgtatt 673  Q
    ||||||||||| |||||||| |||||||||| |||| | ||  ||||||||||||||||||||    
T  14830418 tcgctcattcccaaagtaaatgtccaaaatgtccctacacatgttaacatgcgctagtgtatt 14830480  T

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Target: scaffold1063 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 663
Target Start/End: Original strand, 1473 - 1553
Alignment:
Q  584 ttgaattatgctctttacctaaattatttcgctcattcctaaagtaaa-gtccaaaatgcccctgcgcaacttaacatgcg 663  Q
    ||||||| ||||| ||||| ||||  || ||||||||  ||||||||| ||||||||||||||||||||  ||||||||||    
T  1473 ttgaattctgctcattacccaaatggttccgctcatttttaaagtaaaagtccaaaatgcccctgcgcatgttaacatgcg 1553  T

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Target: scaffold1763 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 442 - 397
Alignment:
Q  586 gaattatgctctttacctaaattatttcgctcattcctaaagtaaa 631  Q
    ||||||||||||||||| ||||  ||||||||||||| ||||||||    
T  442 gaattatgctctttacccaaatggtttcgctcattcccaaagtaaa 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 769
Target Start/End: Original strand, 20096 - 20185
Alignment:
Q  680 gtgacttaaggcacctaccactgagccttagcacgagttaactcacactagttggccggtggttagaactgaagaacaaacgttttttgg 769  Q
    |||||||||| |||  ||||||||||||  || ||||||||||  | | |||||||||||||| | || ||||| |||||||||| ||||    
T  20096 gtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaattgaagcacaaacgtttcttgg 20185  T

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