View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8916_low_13 (Length: 386)

Name: NF8916_low_13
Description: NF8916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8916_low_13
NF8916_low_13
[»] chr7 (10 HSPs)
chr7 (15-386)||(23993137-23993508)
chr7 (262-385)||(15440652-15440775)
chr7 (244-316)||(24001868-24001940)
chr7 (244-316)||(24010052-24010124)
chr7 (101-162)||(24002034-24002095)
chr7 (240-304)||(24035432-24035496)
chr7 (262-333)||(15508401-15508472)
chr7 (111-162)||(24010218-24010269)
chr7 (74-160)||(15508583-15508669)
chr7 (101-155)||(26256617-26256671)
[»] chr8 (2 HSPs)
chr8 (103-168)||(11345277-11345342)
chr8 (103-168)||(11338752-11338817)
[»] chr1 (1 HSPs)
chr1 (270-334)||(17954036-17954100)


Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 386
Target Start/End: Complemental strand, 23993508 - 23993137
Alignment:
Q  15 cagagactgtcactcaaaaccctaagaactggctgctgaatgtgaagagatggaacccaattaaaatctgaaggcagcagaaacgtcttgtatgtctccg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23993508 cagagactgtcactcaaaaccctaagaactggctgctgaatgtgaagagatggaaccccattaaaatctgaaggcagcagaaacgtcttgtatgtctccg 23993409  T
Q  115 ttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatagacttgtaagtcatccaattaatagtgccattaaaatgcacaccgtcgttgag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23993408 ttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatagacttgtaagtcatccaattaatagtgccattaaaatgcacaccgtcgttgag 23993309  T
Q  215 gtgactgtgtcgaatatgaacattaaaccaattaagaggaaccgcagtaaagctctgaatatttctccaacaattattacctagactgaagacttcaacc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23993308 gtgactgtgtcgaatatgaacattaaaccaattaagaggaaccgcagtaaagctctgaatatttctccaacaattattacctagactgaagacttcaacc 23993209  T
Q  315 tcgcttttccacgaagcttcattcttttcagcatgaaccactacaaccttataagttcttgttgaagcatcg 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23993208 tcgcttttccacgaagcttcattcttttcagcatgaaccactacaaccttataagttcttgttgaagcatcg 23993137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 262 - 385
Target Start/End: Complemental strand, 15440775 - 15440652
Alignment:
Q  262 taaagctctgaatatttctccaacaattattacctagactgaagacttcaacctcgcttttccacgaagcttcattcttttcagcatgaaccactacaac 361  Q
    |||||||||  ||||||||||||||||||||||| |||| ||| |||| |||| |  ||||||| |||||||  ||||||| |  | |||    ||||||    
T  15440775 taaagctctctatatttctccaacaattattaccaagacggaaaactttaaccacatttttccatgaagctttgttcttttgacgacgaatagttacaac 15440676  T
Q  362 cttataagttcttgttgaagcatc 385  Q
    ||||||||||||||||||||||||    
T  15440675 cttataagttcttgttgaagcatc 15440652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 24001940 - 24001868
Alignment:
Q  244 aattaagaggaaccgcagtaaagctctgaatatttctccaacaattattacctagactgaagacttcaacctc 316  Q
    |||||||||||| | ||| |||||||||||||||||||||||||||| | || |||||||| |||| ||||||    
T  24001940 aattaagaggaaacacaggaaagctctgaatatttctccaacaattacttccaagactgaaaactttaacctc 24001868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 24010124 - 24010052
Alignment:
Q  244 aattaagaggaaccgcagtaaagctctgaatatttctccaacaattattacctagactgaagacttcaacctc 316  Q
    |||||||||||| | ||  |||||||||||||| ||||||||||||||  ||||||||||| |||| ||||||    
T  24010124 aattaagaggaagcacaagaaagctctgaatatctctccaacaattatctcctagactgaaaactttaacctc 24010052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 24002095 - 24002034
Alignment:
Q  101 cttgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatag 162  Q
    ||||||||  |||||||||||||||||||||| ||||  |||||||||| | ||||||||||    
T  24002095 cttgtatgattccgttgaaaggtcaagtgaaacaatcacaaattgctcaacgtgaataatag 24002034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 24035496 - 24035432
Alignment:
Q  240 aaccaattaagaggaaccgcagtaaagctctgaatatttctccaacaattattacctagactgaa 304  Q
    ||||||||||||||||    || ||||||||||||||||||||||||||||| ||| ||| ||||    
T  24035496 aaccaattaagaggaaatataggaaagctctgaatatttctccaacaattatcaccaagattgaa 24035432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 15508472 - 15508401
Alignment:
Q  262 taaagctctgaatatttctccaacaattattacctagactgaagacttcaacctcgcttttccacgaagctt 333  Q
    |||||||||  ||||||||||||||||||||| | |||||||| |||| |||| |  ||||||| |||||||    
T  15508472 taaagctctctatatttctccaacaattattaacaagactgaaaactttaaccacatttttccatgaagctt 15508401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 24010269 - 24010218
Alignment:
Q  111 tccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatag 162  Q
    |||||||||||||||||||||| ||||  |||||||||| | ||||||||||    
T  24010269 tccgttgaaaggtcaagtgaaacaatcgcaaattgctcaacgtgaataatag 24010218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 15508669 - 15508583
Alignment:
Q  74 attaaaatctgaaggcagcagaaacgtcttgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataat 160  Q
    ||||||| | |||||||||||||||  ||||||| | || || ||||||||||||| || ||||  |||||||||| ||||| ||||    
T  15508669 attaaaacccgaaggcagcagaaaccgcttgtatttttctgtcgaaaggtcaagtgcaacaatcataaattgctcaacatgagtaat 15508583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 26256671 - 26256617
Alignment:
Q  101 cttgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatga 155  Q
    ||||||||||||||||||||| ||||| |||| ||||  |||||||||| |||||    
T  26256671 cttgtatgtctccgttgaaagatcaagcgaaataatcacaaattgctcaacatga 26256617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 11345277 - 11345342
Alignment:
Q  103 tgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatagacttgt 168  Q
    |||||||||| |||||||||||||| |||| |||||  ||||| ||| ||||| ||||||||||||    
T  11345277 tgtatgtctcagttgaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgt 11345342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 11338752 - 11338817
Alignment:
Q  103 tgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatagacttgt 168  Q
    |||||||||| |||||||| ||||| |||| |||||  ||||| ||| ||||| ||||||||||||    
T  11338752 tgtatgtctcagttgaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgt 11338817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 17954036 - 17954100
Alignment:
Q  270 tgaatatttctccaacaattattacctagactgaagacttcaacctcgcttttccacgaagcttc 334  Q
    |||||||||||||||||||||| ||| | |||| | |||| ||||||||||||| | ||||||||    
T  17954036 tgaatatttctccaacaattatcacccaaactgtaaactttaacctcgcttttcaatgaagcttc 17954100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University