View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8916_low_20 (Length: 216)

Name: NF8916_low_20
Description: NF8916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8916_low_20
NF8916_low_20
[»] chr6 (4 HSPs)
chr6 (16-198)||(33575808-33575990)
chr6 (16-177)||(5978665-5978826)
chr6 (30-99)||(33568636-33568705)
chr6 (69-115)||(19747033-19747079)
[»] chr3 (1 HSPs)
chr3 (23-159)||(36339760-36339896)
[»] scaffold0707 (1 HSPs)
scaffold0707 (30-99)||(5030-5099)
[»] chr1 (2 HSPs)
chr1 (43-93)||(17954036-17954086)
chr1 (55-102)||(39379422-39379469)
[»] chr7 (4 HSPs)
chr7 (43-93)||(24035416-24035466)
chr7 (54-112)||(26237278-26237336)
chr7 (54-99)||(26229881-26229926)
chr7 (55-99)||(24391079-24391123)
[»] chr4 (1 HSPs)
chr4 (55-103)||(3557388-3557436)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 33575808 - 33575990
Alignment:
Q  16 agagatcgagaacaaaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctatt 115  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33575808 agagatcgagaacaaaagtttatggagaagcaaggttaaagttttcaattcgggtgataattgttggagaaatattcgaagtttccctttcgttcctatt 33575907  T
Q  116 ttgggaaatgatggtgtatattgtagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggagg 198  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575908 ttgggaaatgatggtgttcattttagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggagg 33575990  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 5978665 - 5978826
Alignment:
Q  16 agagatcgagaacaaaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctatt 115  Q
    ||||| ||||| | ||||||||||||||||||||||    ||||||| ||||||||||  |||||||||| | ||||||||||| ||||| |||||| ||    
T  5978665 agagaccgagaccgaaggtttatggagaagcaaggtgagggttttcagtttgggtgatttttgttggagagagattcaaagttttcctttggttcctctt 5978764  T
Q  116 ttgggaaatgatggtgtatattgtagtggaactattaactggttagctattcacagtgacta 177  Q
     | || |||||||||||  |||  ||||||||  |||| ||| ||||||||||| |||||||    
T  5978765 atcgggaatgatggtgtgcatttgagtggaacggttaattggctagctattcacggtgacta 5978826  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 33568636 - 33568705
Alignment:
Q  30 aaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagttt 99  Q
    |||||||||||||||   ||||   |||||||| ||||||||||| ||||||||||||||||||||||||    
T  33568636 aaggtttatggagaaatgaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttt 33568705  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 19747079 - 19747033
Alignment:
Q  69 gtgataattgttggagaaatattcaaagtttccctttcgttcctatt 115  Q
    ||||||||||||||||||||||| | |||||||||||  ||||||||    
T  19747079 gtgataattgttggagaaatattgagagtttccctttgattcctatt 19747033  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 36339760 - 36339896
Alignment:
Q  23 gagaacaaaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaa 122  Q
    |||||| || |||||||||||||||||||   |||||| | ||| |||||||||||||||||| ||||||||||||||||||| |||||| || |  | |    
T  36339760 gagaacgaaagtttatggagaagcaaggtggcagtttttagttttggtgataattgttggagatatattcaaagtttccctttggttcctcttatatgga 36339859  T
Q  123 atgatggtgtatattgtagtggaactattaactggtt 159  Q
    ||||||||||  |||  |||||| |||||||||||||    
T  36339860 atgatggtgtgcatttgagtggagctattaactggtt 36339896  T

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Target: scaffold0707 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 5030 - 5099
Alignment:
Q  30 aaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagttt 99  Q
    |||||||||||||||   ||||   |||||||| ||||||||||| ||||||||||||||||||||||||    
T  5030 aaggtttatggagaaatgaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttt 5099  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 17954086 - 17954036
Alignment:
Q  43 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 93  Q
    |||| ||||| |||||| || ||||||||||||||||||||||||||||||    
T  17954086 aagcgaggttaaagtttacagtttgggtgataattgttggagaaatattca 17954036  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 39379469 - 39379422
Alignment:
Q  55 agttttcaatttgggtgataattgttggagaaatattcaaagtttccc 102  Q
    |||||||| |||||||||||||  ||||||||||||| ||||||||||    
T  39379469 agttttcagtttgggtgataatgtttggagaaatattgaaagtttccc 39379422  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 24035416 - 24035466
Alignment:
Q  43 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 93  Q
    ||||| |||| || |||||||| | ||||||||||||||||||||||||||    
T  24035416 aagcagggttaaaattttcaatcttggtgataattgttggagaaatattca 24035466  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 26237278 - 26237336
Alignment:
Q  54 aagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcct 112  Q
    ||||||| | |||||||| ||| ||||||||||||||||||||||| ||  ||||||||    
T  26237278 aagtttttagtttgggtgttaactgttggagaaatattcaaagttttccggtcgttcct 26237336  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 26229881 - 26229926
Alignment:
Q  54 aagttttcaatttgggtgataattgttggagaaatattcaaagttt 99  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||||    
T  26229881 aagtttttagtttgggtggtaactgttggagaaatattcaaagttt 26229926  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 24391079 - 24391123
Alignment:
Q  55 agttttcaatttgggtgataattgttggagaaatattcaaagttt 99  Q
    |||||| | |||||||||||||  |||||||||||||||||||||    
T  24391079 agtttttagtttgggtgataatatttggagaaatattcaaagttt 24391123  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 3557388 - 3557436
Alignment:
Q  55 agttttcaatttgggtgataattgttggagaaatattcaaagtttccct 103  Q
    |||||||| ||| |||||||||  ||||||||||||| |||||||||||    
T  3557388 agttttcagtttaggtgataatgtttggagaaatattgaaagtttccct 3557436  T

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