View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8916_low_3 (Length: 613)
Name: NF8916_low_3
Description: NF8916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8916_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 12 - 596
Target Start/End: Original strand, 47918429 - 47919003
Alignment:
| Q |
12 |
cagagacaaaataggggagatgaacctgttgagcctataaaggttcgaaaagcactcaaagggtgaccattccggcataattcaggtactaattaagctt |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918429 |
cagagacaaaataggggagatgaacctgttgagcctataaaggttcgaaaagcactcaaagggtgaccattccggcataattcaggtactaattaagctt |
47918528 |
T |
|
| Q |
112 |
ttgaaattgctgctgcaatctatgatattataaaaaattgcagtcagagtattagtaatataaatcaagattatannnnnnnctttccattttctcacgt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | | | |
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| T |
47918529 |
ttgaaattgctgctgcaatctatgatattataaaaaattgcagtcagagtattagtaatataaatcaagattatatt------tttttatgt----atat |
47918618 |
T |
|
| Q |
212 |
ttatttctgtccaattctatctgaagtgaaagagtttttatgtataaactcttttttattgccggtgtattcttttgttccagacttgttatattctttg |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918619 |
ttatttctgtccaattctatctgaagtgaaagagtttttatgtataaactcttttttattgccggtgtattcttttgttccagacttgttatattctttg |
47918718 |
T |
|
| Q |
312 |
gtccattgaatctgtcaaatgcggcttatacattccattgtggtcgcagttgcaaagacatgaatattaaaacattgatgtcacagcctagattgcggtt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918719 |
gtccattgaatctgtcaaatgcggcttatacattccattgtggtcgcagttgcaaagacatgaatattaaaacattgatgtcacagcctagattgcggtt |
47918818 |
T |
|
| Q |
412 |
gcaaactctttaaaaagaaatgctaagtaggtcctagaagttaagtttattcttggggagatgagaatgaataactgatgtctgatgaatgatattttgc |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918819 |
gcaaactctttaaaaagaaatgctaagtaggtcctagaagttaagtttattcttggggagatgagaatgaataactgatgtctgatgaatgatattttgc |
47918918 |
T |
|
| Q |
512 |
aggtgctgttgaaacctccaagtgacgaacctcttattggacatgttgatgatgcaaagcttattgacatgaccggtgttgatat |
596 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47918919 |
aggtgctgttgaaacctccaagtgacgaacctcttattggacatgttgataatgcaaagcttattgacatgaccggtgttgatat |
47919003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 249 - 326
Target Start/End: Original strand, 6932520 - 6932600
Alignment:
| Q |
249 |
ttatgtataaactctttt---ttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgt |
326 |
Q |
| |
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|||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||| ||| ||||||||||| |
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| T |
6932520 |
ttatgtataaactctttttttttattgccaatatattcttttgttccagacttggtatattctttagtcaattgaatctgt |
6932600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 62 - 384
Target Start/End: Complemental strand, 29918694 - 29918375
Alignment:
| Q |
62 |
agcactcaaagggtgaccattccggcataattcaggtactaatta---agcttttgaaattgctgctgcaatctatgatattataaaaaattgcagtcag |
158 |
Q |
| |
|
||||||||| |||||||||| | ||||||||||||||||||| || | |||||||||||||||||| |||||||| ||||||||||| | |||| || |
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| T |
29918694 |
agcactcaaggggtgaccatgctggcataattcaggtactaagtactaaacttttgaaattgctgctgtgatctatgaaattataaaaaaattcagttag |
29918595 |
T |
|
| Q |
159 |
agtattagtaatataaatcaagattatannnnnnnctttccattttctcacgtttatttctgtccaattctatctgaagtgaaagagtttttatgtataa |
258 |
Q |
| |
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|| |||||||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||| ||||||||| || ||||||||||||| |
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| T |
29918594 |
agaattagtaatataaatcaagattcaaattat---tttccattttctcacacctatttatgtccaattctatgtgaagtgaa-gactttttatgtataa |
29918499 |
T |
|
| Q |
259 |
actcttttttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgtcaaatgcggcttatacattccattgtggtcgc |
358 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||||||| || ||||||| |||||| |
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| T |
29918498 |
actctttt--attgccgatgtattcttttgttccagacttgttatctggtttaatccattgaatctgttaaatgcggcttatgcaatccattgcggtcgc |
29918401 |
T |
|
| Q |
359 |
agttgcaaagacatgaatattaaaac |
384 |
Q |
| |
|
|||||||||||||| ||||| ||||| |
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|
| T |
29918400 |
agttgcaaagacatcaatataaaaac |
29918375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 493 - 596
Target Start/End: Complemental strand, 29918330 - 29918227
Alignment:
| Q |
493 |
ctgatgaatgatattttgcaggtgctgttgaaacctccaagtgacgaacctcttattggacatgttgatgatgcaaagcttattgacatgaccggtgttg |
592 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||| |
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| T |
29918330 |
ctgatgaatgatattttgcaggtgatgctgaaacctccaagtgacgaacctcttattggaaatgctgatgatgcaaagcttattgacctgaccgatgttg |
29918231 |
T |
|
| Q |
593 |
atat |
596 |
Q |
| |
|
|||| |
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|
| T |
29918230 |
atat |
29918227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 29918803 - 29918750
Alignment:
| Q |
12 |
cagagacaaaataggggagatgaacctgttgagcctataaaggttcgaaaagca |
65 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
29918803 |
cagagacaaaataggggtgatgaacctgttgagcctataaaggttcaaaaagca |
29918750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 249 - 326
Target Start/End: Original strand, 508582 - 508662
Alignment:
| Q |
249 |
ttatgtataaactctttt---ttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgt |
326 |
Q |
| |
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|||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||| ||| ||||||||||| |
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| T |
508582 |
ttatgtataaactctttttttttattgccaatatattcttttgttccagacttggtatattctttagtcaattgaatctgt |
508662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 26291192 - 26291271
Alignment:
| Q |
249 |
ttatgtataaactctttt----ttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatct |
324 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||| ||| ||||||||| |
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|
| T |
26291192 |
ttatgtataaactcttttttttttattgccaatatattcttttgttccagacttggtatattctttagtcaattgaatct |
26291271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 18290906 - 18290981
Alignment:
| Q |
250 |
tatgtataaactctttttta-ttgccggtgtattcttttgttccagacttgttatattctttggtccattgaatct |
324 |
Q |
| |
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||||||||||||| |||||| || || | ||||||||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
18290906 |
tatgtataaactcctttttaattcccaatatattcttttgttccaaacttgttatattctttagtcaattgaatct |
18290981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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