View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8916_low_5 (Length: 560)

Name: NF8916_low_5
Description: NF8916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8916_low_5
NF8916_low_5
[»] chr4 (52 HSPs)
chr4 (18-547)||(2621161-2621690)
chr4 (168-545)||(2467213-2467587)
chr4 (168-308)||(2518904-2519044)
chr4 (410-545)||(2486229-2486364)
chr4 (174-309)||(2547221-2547356)
chr4 (168-291)||(2533984-2534107)
chr4 (433-528)||(5106333-5106428)
chr4 (410-528)||(5102106-5102224)
chr4 (418-547)||(2367676-2367805)
chr4 (19-111)||(2373666-2373761)
chr4 (422-543)||(2547466-2547587)
chr4 (239-308)||(5102326-5102395)
chr4 (174-298)||(5106558-5106685)
chr4 (20-111)||(2368103-2368197)
chr4 (431-531)||(2472035-2472135)
chr4 (175-226)||(2367982-2368033)
chr4 (174-273)||(2490805-2490904)
chr4 (422-545)||(2491062-2491185)
chr4 (18-124)||(2471574-2471680)
chr4 (410-528)||(2519155-2519273)
chr4 (168-226)||(2525426-2525484)
chr4 (176-226)||(5035301-5035351)
chr4 (176-282)||(12124524-12124630)
chr4 (410-471)||(2382562-2382623)
chr4 (55-140)||(2382915-2383000)
chr4 (170-271)||(2475953-2476054)
chr4 (246-310)||(2361198-2361262)
chr4 (178-226)||(2546825-2546873)
chr4 (410-545)||(2525679-2525814)
chr4 (176-226)||(2373548-2373598)
chr4 (64-110)||(12124406-12124452)
chr4 (172-299)||(2393839-2393965)
chr4 (335-524)||(2477421-2477604)
chr4 (18-119)||(5102506-5102607)
chr4 (434-547)||(12124770-12124883)
chr4 (84-128)||(2167816-2167860)
chr4 (170-218)||(2363162-2363210)
chr4 (246-306)||(2381630-2381690)
chr4 (416-516)||(2391036-2391136)
chr4 (246-306)||(2391258-2391318)
chr4 (18-126)||(2477095-2477203)
chr4 (170-202)||(2625602-2625634)
chr4 (71-111)||(12126466-12126506)
chr4 (338-397)||(2486145-2486204)
chr4 (410-545)||(5035544-5035679)
chr4 (21-128)||(5106722-5106829)
chr4 (500-542)||(1517029-1517071)
chr4 (246-299)||(2382747-2382800)
chr4 (246-299)||(2482529-2482582)
chr4 (256-293)||(2486066-2486103)
chr4 (174-226)||(2460283-2460335)
chr4 (174-226)||(2471733-2471785)
[»] chr7 (1 HSPs)
chr7 (431-528)||(2576415-2576512)
[»] chr1 (2 HSPs)
chr1 (431-531)||(15837979-15838079)
chr1 (170-206)||(7555124-7555160)
[»] chr8 (1 HSPs)
chr8 (167-220)||(18314718-18314771)
[»] chr6 (2 HSPs)
chr6 (245-308)||(6423906-6423969)
chr6 (246-308)||(10579090-10579152)
[»] chr5 (1 HSPs)
chr5 (175-219)||(28673354-28673398)


Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Complemental strand, 2621690 - 2621161
Alignment:
Q  18 gaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621690 gaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccg 2621591  T
Q  118 atcatcatcatctagctcaaaatcatagctagtagcaataacaggatggctaaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaataga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621590 atcatcatcatctagctcaaaatcatagctagtagcaataacaggatggctaaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaataga 2621491  T
Q  218 tcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaatattgctat 317  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2621490 tcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatttttcatatttttggagaaagctcgcaacccatctgtaggaatattgctat 2621391  T
Q  318 agcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgtt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621390 agcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgtt 2621291  T
Q  418 gagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggac 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621290 gagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggac 2621191  T
Q  518 aaaaactgtttggacacgagggagagaggt 547  Q
    |||||||||||||| |||||||||||||||    
T  2621190 aaaaactgtttggatacgagggagagaggt 2621161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 168 - 545
Target Start/End: Original strand, 2467213 - 2467587
Alignment:
Q  168 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattg---attcggtaacaagtgaaagatgtcaa 264  Q
    ||||| |||| |||||||||||||||||||||||||||| |||||| ||||| ||||||  ||| | |      ||||||||||||||||  ||||||||    
T  2467213 taaggatgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaa 2467312  T
Q  265 atttttcatgtttttggagaaagctcgcaacccatctgtaggaatattgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggat 364  Q
    ||||||||| | |||||||||||||||||||||||||| |||||   |  ||| |   ||| ||| ||| || ||||||| ||| | ||||||||||||     
T  2467313 atttttcatctctttggagaaagctcgcaacccatctgcaggaaccgt--tatgggg-tggtagagagtgagggatttgaggtccaaagggaaagtggag 2467409  T
Q  365 atattagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaag 464  Q
    || || ||||||||  ||| |||||||||||||   ||||     |||||||  |  ||| ||||||| |||||||| || ||||| ||| |||  ||||    
T  2467410 attttggtaagaagtgcgttgaggtcactttctaccgagaga---gtgatgtcaattgatctgatattggggaacctttcaaagagacgatgaagtaaag 2467506  T
Q  465 ggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagag 545  Q
    |||| |||   ||||| || | || |||||| || |||| |||||| ||||||||||||||||| || |||| ||||||||    
T  2467507 ggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagag 2467587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 168 - 308
Target Start/End: Original strand, 2518904 - 2519044
Alignment:
Q  168 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatt 267  Q
    ||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||| |  || |||   |||||||||| | ||||||||||    
T  2518904 taaggatgagttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatt 2519003  T
Q  268 tttcatgtttttggagaaagctcgcaacccatctgtaggaa 308  Q
    |||||||||||  || |||||| ||||||| ||| ||||||    
T  2519004 tttcatgttttgagacaaagcttgcaacccttctttaggaa 2519044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 410 - 545
Target Start/End: Original strand, 2486229 - 2486364
Alignment:
Q  410 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 509  Q
    ||||| ||| ||||||| | |||||||||||  |  ||||| ||| ||| ||||||||| ||||| |||||||||||||  ||||| || ||||||||||    
T  2486229 gtgatattgtgggatgtaacattagggaacccataaaagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttgg 2486328  T
Q  510 tgatggacaaaaactgtttggacacgagggagagag 545  Q
    ||||||||| ||||||||| || |||||||||||||    
T  2486329 tgatggacagaaactgttttgagacgagggagagag 2486364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 174 - 309
Target Start/End: Original strand, 2547221 - 2547356
Alignment:
Q  174 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcat 273  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||     |||||  | ||||| ||| ||| ||||||||||||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcat 2547320  T
Q  274 gtttttggagaaagctcgcaacccatctgtaggaat 309  Q
     ||||  || |||||||||||||||| || ||||||    
T  2547321 cttttcagacaaagctcgcaacccatttgcaggaat 2547356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 168 - 291
Target Start/End: Original strand, 2533984 - 2534107
Alignment:
Q  168 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatt 267  Q
    ||||| |||||||||| ||||||||||||||||||||||  ||||| ||||||||||||  ||| |   | ||| | |||||||||| |||||| |||||    
T  2533984 taaggatgagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatt 2534083  T
Q  268 tttcatgtttttggagaaagctcg 291  Q
    |||||| || ||||| ||||||||    
T  2534084 tttcatcttcttggacaaagctcg 2534107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 433 - 528
Target Start/End: Complemental strand, 5106428 - 5106333
Alignment:
Q  433 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 528  Q
    ||||||||| | |||||||||| |||||||||||||||||| ||  | ||||||||  ||||| ||  ||||||||||||||||||||||||||||    
T  5106428 agggaaccttttgaagaggcgatgaatgaaagggatggtttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttt 5106333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 410 - 528
Target Start/End: Complemental strand, 5102224 - 5102106
Alignment:
Q  410 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 509  Q
    ||||||||||| |||||||  ||||||||||| ||||| ||| ||||||||||||||||||||  ||| | ||||||||  ||||| || ||||  || |    
T  5102224 gtgatgttgagtgatgtgacgttagggaacctttcgaaaaggagaggaatgaaagggatggttcgatcagtgattgtgaccgagaatcgaagactattag 5102125  T
Q  510 tgatggacaaaaactgttt 528  Q
    |||| ||||||||||||||    
T  5102124 tgatagacaaaaactgttt 5102106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 418 - 547
Target Start/End: Complemental strand, 2367805 - 2367676
Alignment:
Q  418 gagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggac 517  Q
    |||||||||||  || |||||||| | ||| ||||||  || ||||||||| ||||||||||| ||||  |||||||| || |||||||||||||||||     
T  2367805 gagggatgtgaggttggggaacctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttggtgatggag 2367706  T
Q  518 aaaaactgtttggacacgagggagagaggt 547  Q
    | ||| |||||||| |||| ||| ||||||    
T  2367705 agaaattgtttggagacgatggaaagaggt 2367676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 2373761 - 2373666
Alignment:
Q  19 aagaaggttacagttcttgcagagagagttaacatattggcgatc---gatgaaattacctgataaattaattttgcggagtttgggaagtgccaa 111  Q
    |||||||||||| || ||| ||||| |||||| | ||||| ||||   |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2373761 aagaaggttacaatttttgaagagatagttaatagattggtgatctttgatgcaattacctgataaattaatcttgcggagtttgggaagtgccaa 2373666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 422 - 543
Target Start/End: Original strand, 2547466 - 2547587
Alignment:
Q  422 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 521  Q
    |||||||| ||||||||||| | ||||| | |||||| | || ||||| | | |  |||||||||||  |||||||| ||||||||||||||||||| ||    
T  2547466 gatgtgatgttagggaacctttggaagaagtgaggaagggaaaggatgatatgactggagattgtgactgagaaccggagacggttggtgatggacagaa 2547565  T
Q  522 actgtttggacacgagggagag 543  Q
    |||||||||| |||| ||||||    
T  2547566 actgtttggagacgatggagag 2547587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 5102395 - 5102326
Alignment:
Q  239 attcggtaacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 308  Q
    |||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||| | ||||||||    
T  5102395 attcggtaacaagtgatagatgtcaaatttttcatcttttgggagaatgctcgcaacccttttgtaggaa 5102326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 5106685 - 5106558
Alignment:
Q  174 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggatttt---attgattcggtaacaagtgaaagatgtcaaattttt 270  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||| |||||   |       |   |||||||||||||||| |||||||||||||||    
T  5106685 tgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacacccgaagcaattcggtaacaagtgatagatgtcaaattttt 5106586  T
Q  271 catgtttttggagaaagctcgcaaccca 298  Q
    ||| |||  |||||||||||||||||||    
T  5106585 catctttagggagaaagctcgcaaccca 5106558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 2368197 - 2368103
Alignment:
Q  20 agaaggttacagttcttgcagagagagttaacatattggcgatcgatga---aattacctgataaattaattttgcggagtttgggaagtgccaa 111  Q
    ||||||| |||||||||| ||||| |||||| | |||| |||||  |||   ||||||| ||||||||||| |||||||||||||||||||||||    
T  2368197 agaaggtcacagttcttgaagagatagttaatagattgtcgatctttgatccaattaccagataaattaatcttgcggagtttgggaagtgccaa 2368103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 531
Target Start/End: Original strand, 2472035 - 2472135
Alignment:
Q  431 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 530  Q
    ||||||||||| ||||||||| || ||| ||||||||| |||| |  | ||||||||| |||||| |  ||||| ||||||||||| |||||||||||||    
T  2472035 ttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcagagacgattggtgatggagaaaaactgtttgg 2472134  T
Q  531 a 531  Q
    |    
T  2472135 a 2472135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 2368033 - 2367982
Alignment:
Q  175 gagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 226  Q
    |||||||||||||||||||||||||||||||| |||||| |||||| |||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttg 2367982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 273
Target Start/End: Original strand, 2490805 - 2490904
Alignment:
Q  174 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcat 273  Q
    ||||||| |||||||||||||||||||||||||  || || ||||||||||||  |||     | ||||| |||||||||| ||||||||||||||||||    
T  2490805 tgagttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttttcat 2490904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 545
Target Start/End: Original strand, 2491062 - 2491185
Alignment:
Q  422 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 521  Q
    ||||| || ||||||||||| || ||||| |||  || ||||||||| |||  ||||||||||||||  || || || |||||||| |||||||||| ||    
T  2491062 gatgtaatgttagggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaa 2491161  T
Q  522 actgtttggacacgagggagagag 545  Q
    ||||||| || ||||| |||||||    
T  2491162 actgttttgagacgagtgagagag 2491185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 2471574 - 2471680
Alignment:
Q  18 gaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccg 117  Q
    ||||||||||||| ||||||||||||  | ||| | |||||||| | || || |||||  |||||| ||| |||||||||||||||||| |||||||  |    
T  2471574 gaagaaggttacaattcttgcagagatcgataatagattggcgaaccatcaatttaccatataaataaatcttgcggagtttgggaagttccaacaattg 2471673  T
Q  118 atcatca 124  Q
    |||||||    
T  2471674 atcatca 2471680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 410 - 528
Target Start/End: Original strand, 2519155 - 2519273
Alignment:
Q  410 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 509  Q
    ||||||||||| ||||| |  || |||||||| || ||||| ||| ||| ||||||||| |||| ||| ||||||||||  ||| | || | ||||||||    
T  2519155 gtgatgttgagtgatgtaacgttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttgg 2519254  T
Q  510 tgatggacaaaaactgttt 528  Q
    ||||||||| |||||||||    
T  2519255 tgatggacagaaactgttt 2519273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 2525426 - 2525484
Alignment:
Q  168 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 226  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||  ||||||||||||    
T  2525426 taaggatgagttcttcgagtagagggaaacaatcagcaatgaagagcagatcattcttg 2525484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 5035301 - 5035351
Alignment:
Q  176 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 226  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  5035301 agttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttg 5035351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 176 - 282
Target Start/End: Original strand, 12124524 - 12124630
Alignment:
Q  176 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttttcatgt 275  Q
    |||||||| |||||||||||||||||||||| |||||| |||||| ||||  | ||   | | |||| | ||||||||| ||| |||||||||||||| |    
T  12124524 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagagaggtcaaatttttcatct 12124623  T
Q  276 ttttgga 282  Q
    |||||||    
T  12124624 ttttgga 12124630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 471
Target Start/End: Complemental strand, 2382623 - 2382562
Alignment:
Q  410 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggt 471  Q
    ||||| ||||||||||||| |||||||| |||   |||||||||||||||||||||||||||    
T  2382623 gtgatattgagggatgtgacattagggagccttcggaagaggcgaggaatgaaagggatggt 2382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 2383000 - 2382915
Alignment:
Q  55 ttggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccgatcatcatcatctagctcaaaat 140  Q
    ||||| ||||||| |||||||  | |||||||| || |||||||||||||||||||| ||  ||| ||||||||||||| ||||||    
T  2383000 ttggctatcgatggaattaccatacaaattaatctttcggagtttgggaagtgccaaaaattgattatcatcatctagcacaaaat 2382915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 271
Target Start/End: Original strand, 2475953 - 2476054
Alignment:
Q  170 aggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaatttt 269  Q
    ||||||| ||||||||||||||| || |||| ||| || ||||| ||||||| |||| |||| | |||  ||  ||||||||||| ||||||||||||||    
T  2475953 aggttgatttcttcgagtaaaggaaagcaattagctagaaagaagagatcatccttgtggatataattctttttgtaacaagtgagagatgtcaaatttt 2476052  T
Q  270 tc 271  Q
    ||    
T  2476053 tc 2476054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 2361262 - 2361198
Alignment:
Q  246 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaata 310  Q
    ||||||||| |||||||||||||||||| |||||||| |||||||| | ||||  ||||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcgtagcccacttgtaggaata 2361198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 2546825 - 2546873
Alignment:
Q  178 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 226  Q
    ||||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  2546825 ttcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttg 2546873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 545
Target Start/End: Original strand, 2525679 - 2525814
Alignment:
Q  410 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 509  Q
    ||||| ||||| ||||  || ||||||||||| || ||||| |||  ||  |||||||| |||  || |||||||||||   |||| || |||| |||||    
T  2525679 gtgatattgagtgatgcaatgttagggaacctttcaaagagacgattaagaaaagggatagttgcattggagattgtgaccaagaatcgaagactgttgg 2525778  T
Q  510 tgatggacaaaaactgtttggacacgagggagagag 545  Q
    ||||||||| ||||||||| || |||||||||||||    
T  2525779 tgatggacagaaactgttttgagacgagggagagag 2525814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 2373598 - 2373548
Alignment:
Q  176 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 226  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||| |||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatgaagaagagatcactcttg 2373548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 12124406 - 12124452
Alignment:
Q  64 gatgaaattacctgataaattaattttgcggagtttgggaagtgcca 110  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  12124406 gatgcaattaccagataaattaatcttgcggagtttgggaagtgcca 12124452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 299
Target Start/End: Complemental strand, 2393965 - 2393839
Alignment:
Q  172 gttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattgattcggtaacaagtgaaagatgtcaaa-ttttt 270  Q
    ||||||||||| ||||||||||||| ||||||||| ||| || ||| ||||||||| |||  || | |||   ||  | |||| |||||||||| |||||    
T  2393965 gttgagttcttggagtaaagggaaaaaatcagcaatgaaaaagagaccattcttgcagataatagtcatt--ttagaatgtgagagatgtcaaatttttt 2393868  T
Q  271 catgtttttggagaaagctcgcaacccat 299  Q
    ||| |||| ||| ||||||||||||||||    
T  2393867 catcttttgggacaaagctcgcaacccat 2393839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 524
Target Start/End: Original strand, 2477421 - 2477604
Alignment:
Q  335 agcgatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattag 434  Q
    |||||| ||| ||||| ||  ||||||||||| |  ||||||||||| || |||||||||||| | ||||     |||||||| ||||||||||  ||||    
T  2477421 agcgatctgaggtctatagctaaagtggatatttgggtaagaagctcatcaaggtcactttctct-gaga-----gtgatgtttagggatgtgacgttag 2477514  T
Q  435 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaact 524  Q
    ||||||| |  |||||  || ||| | |||||||||||| |||||| ||||| |  ||||| || |||| |||||| ||||||| |||||    
T  2477515 ggaacctttgaaagagaggatgaagggaagggatggtttgatcggaaattgtcacagagaatcgaagactgttggttatggacagaaact 2477604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 5102607 - 5102506
Alignment:
Q  18 gaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccg 117  Q
    ||||||||| ||||||| |||| |||  ||||| | |||||  | | ||||||||||  ||||||  ||| |||||||||||||||||||||||||| ||    
T  5102607 gaagaaggtcacagttcctgcaaagatggttaatagattgggtacctatgaaattacgagataaaacaatcttgcggagtttgggaagtgccaacaatcg 5102508  T
Q  118 at 119  Q
    ||    
T  5102507 at 5102506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 547
Target Start/End: Original strand, 12124770 - 12124883
Alignment:
Q  434 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 533  Q
    |||||||| | |||||||||   || ||||||||| |||| ||| ||||||| |||||| ||  | ||||||||||||||||| | ||| |||||||| |    
T  12124770 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggaaaattggagacggttggtgatggagagaaattgtttggaga 12124869  T
Q  534 cgagggagagaggt 547  Q
    | | ||||||||||    
T  12124870 caatggagagaggt 12124883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 2167816 - 2167860
Alignment:
Q  84 taattttgcggagtttgggaagtgccaacaaccgatcatcatcat 128  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||    
T  2167816 taattttccggagtttgggaagtgccaaccatcgatcatcatcat 2167860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 2363210 - 2363162
Alignment:
Q  170 aggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagat 218  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||| ||||    
T  2363210 aggttgagttcgtcgaggaaagggaaacaatcagcaatgaagaagagat 2363162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 2381690 - 2381630
Alignment:
Q  246 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtagg 306  Q
    ||||||| | ||| |||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  2381690 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttagg 2381630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 516
Target Start/End: Complemental strand, 2391136 - 2391036
Alignment:
Q  416 ttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatgg 515  Q
    ||||||||||||| ||||| |||||  | |||||   |||||||||||||||||||||  | || |||| |||||||||| || |||  |||||||||||    
T  2391136 ttgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatgg 2391037  T
Q  516 a 516  Q
    |    
T  2391036 a 2391036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 2391318 - 2391258
Alignment:
Q  246 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtagg 306  Q
    ||||||| | ||| |||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  2391318 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttagg 2391258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 2477095 - 2477203
Alignment:
Q  18 gaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccg 117  Q
    |||||||||  ||||||||||||||| ||| || | || | ||| | |||||||||   ||||||  ||| ||||||||||||||||| ||||||||  |    
T  2477095 gaagaaggtcgcagttcttgcagagatagtcaatagatcgtcgacccatgaaattaggagataaagcaatcttgcggagtttgggaagcgccaacaattg 2477194  T
Q  118 atcatcatc 126  Q
    |||||||||    
T  2477195 atcatcatc 2477203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 2625634 - 2625602
Alignment:
Q  170 aggttgagttcttcgagtaaagggaaacaatca 202  Q
    |||||||||||||||||||||||||||||||||    
T  2625634 aggttgagttcttcgagtaaagggaaacaatca 2625602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 12126466 - 12126506
Alignment:
Q  71 ttacctgataaattaattttgcggagtttgggaagtgccaa 111  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  12126466 ttaccagataaattaatcttgcggagtttgggaagtgccaa 12126506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 2486145 - 2486204
Alignment:
Q  338 gatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttct 397  Q
    ||||||| ||| | |||||||||||| ||||  |||||||||||| ||||||||||||||    
T  2486145 gatttgaggtccaaagggaaagtggagatatgtgtaagaagctcgccgaggtcactttct 2486204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 545
Target Start/End: Original strand, 5035544 - 5035679
Alignment:
Q  410 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 509  Q
    ||||| ||||| ||||| |||||||||||||| || ||||| |||  || ||||||||| |||   || |||||| |||   |||| || ||||||||||    
T  5035544 gtgatattgagtgatgtaatattagggaacctttcaaagagacgactaaggaaagggattgttgcctcagagattttgaccaagaatcgaagacggttgg 5035643  T
Q  510 tgatggacaaaaactgtttggacacgagggagagag 545  Q
    ||||||| | ||||||||| || |||| ||| ||||    
T  5035644 tgatggagagaaactgttttgaaacgaaggaaagag 5035679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 5106829 - 5106722
Alignment:
Q  21 gaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccgatc 120  Q
    |||||| |||||||||||| |||  ||||| | |||||  | | | |||||||| ||||||   ||| ||||||||||||||||||||||| ||  ||||    
T  5106829 gaaggtcacagttcttgcaaagatggttaatagattggttacccaggaaattacgtgataacgcaatcttgcggagtttgggaagtgccaataattgatc 5106730  T
Q  121 atcatcat 128  Q
    ||||||||    
T  5106729 atcatcat 5106722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 542
Target Start/End: Complemental strand, 1517071 - 1517029
Alignment:
Q  500 agacggttggtgatggacaaaaactgtttggacacgagggaga 542  Q
    |||||||||||||||||||| || |||||||| ||||||||||    
T  1517071 agacggttggtgatggacaagaattgtttggaaacgagggaga 1517029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 2382800 - 2382747
Alignment:
Q  246 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccat 299  Q
    ||||| ||||||| ||||| |||||||| |||||||| ||||||||||| ||||    
T  2382800 aacaaatgaaagaagtcaattttttcatctttttggacaaagctcgcaatccat 2382747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 2482529 - 2482582
Alignment:
Q  246 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccat 299  Q
    ||||||||| |||||||||||||||||| ||||| || | ||||| ||||||||    
T  2482529 aacaagtgagagatgtcaaatttttcatctttttagatagagctctcaacccat 2482582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 2486066 - 2486103
Alignment:
Q  256 agatgtcaaatttttcatgtttttggagaaagctcgca 293  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  2486066 agatgtcaaatttttcatctttttggacaaagctcgca 2486103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 2460283 - 2460335
Alignment:
Q  174 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 226  Q
    |||||||||||||||| || |||||||||||||  ||||| |||| |||||||    
T  2460283 tgagttcttcgagtaatggaaaacaatcagcaattaagaagagatgattcttg 2460335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 2471733 - 2471785
Alignment:
Q  174 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 226  Q
    ||||||||||||||||||| ||||||||||| |  ||||| |||| |||||||    
T  2471733 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttg 2471785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 431 - 528
Target Start/End: Complemental strand, 2576512 - 2576415
Alignment:
Q  431 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 528  Q
    ||||||| ||| ||||||||||||  ||||||||||||||||  ||||| ||||||||  ||||| || ||||| ||||||||||| |||||||||||    
T  2576512 ttagggatcctttcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaactgttt 2576415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 531
Target Start/End: Complemental strand, 15838079 - 15837979
Alignment:
Q  431 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 530  Q
    ||||||||||| | |||||||  ||||||||||||||| |||| |||   |||| ||| |||||| || ||||||||||||||||| | |||||||||||    
T  15838079 ttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttgg 15837980  T
Q  531 a 531  Q
    |    
T  15837979 a 15837979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 7555124 - 7555160
Alignment:
Q  170 aggttgagttcttcgagtaaagggaaacaatcagcaa 206  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  7555124 aggttgagttcttcgagcaaagggaaacattcagcaa 7555160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 18314771 - 18314718
Alignment:
Q  167 ctaaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatca 220  Q
    ||||||| |||||||||||| ||||||||||||||||||| || ||| ||||||    
T  18314771 ctaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 18314718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 6423906 - 6423969
Alignment:
Q  245 taacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 308  Q
    |||||||||| ||| |||||| || | ||||||| |||||||||||||||||||| ||| ||||    
T  6423906 taacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttgtgggaa 6423969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 10579152 - 10579090
Alignment:
Q  246 aacaagtgaaagatgtcaaatttttcatgtttttggagaaagctcgcaacccatctgtaggaa 308  Q
    |||||||||||  ||||||| || | ||||||| |||||||||||| ||||||||||| ||||    
T  10579152 aacaagtgaaacttgtcaaagttgttatgttttgggagaaagctcgtaacccatctgtgggaa 10579090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 28673398 - 28673354
Alignment:
Q  175 gagttcttcgagtaaagggaaacaatcagcaaggaagaatagatc 219  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||    
T  28673398 gagttcttcgagcaaagggaagcaatcagcaatgaagaagagatc 28673354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University