View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8916_low_6 (Length: 484)
Name: NF8916_low_6
Description: NF8916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8916_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 21 - 469
Target Start/End: Original strand, 180832 - 181280
Alignment:
| Q |
21 |
gacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacag |
120 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
180832 |
gacactagagccagtcatcatataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacag |
180931 |
T |
|
| Q |
121 |
gtttgaaaatttcacatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatct |
220 |
Q |
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| T |
180932 |
gtttgaatatttcacatgttggctctattaccctccctaccccaaatattactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatct |
181031 |
T |
|
| Q |
221 |
catatctgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatg |
320 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
181032 |
catatatgttaagaaattctgcaagtctaacaatacatatcttgaattgcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatg |
181131 |
T |
|
| Q |
321 |
cgcggttcaagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggc |
420 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||| |
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| T |
181132 |
cgcggttccagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactgctcttgcttccacttgctctgcctcaccttctatatggc |
181231 |
T |
|
| Q |
421 |
atgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtc |
469 |
Q |
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| T |
181232 |
atgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtc |
181280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 21 - 469
Target Start/End: Original strand, 1701259 - 1701707
Alignment:
| Q |
21 |
gacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacag |
120 |
Q |
| |
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||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
1701259 |
gacacaggagccagtcatcatataacatcaaatctgaacaatatgcagctgcactccgaatatgacggtccagaagaagttcagattggtgatggtacag |
1701358 |
T |
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| Q |
121 |
gtttgaaaatttcacatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatct |
220 |
Q |
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| T |
1701359 |
gtttgaaaatttcacatgttggctctattaccctccctacccccaatactactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatct |
1701458 |
T |
|
| Q |
221 |
catatctgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatg |
320 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
1701459 |
catatatgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtaaaggatcaggtcacgggggcgacgttgatg |
1701558 |
T |
|
| Q |
321 |
cgcggttcaagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||| |
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| T |
1701559 |
cgcggttcaagtaacagtgatctctacacctttcatcctaagtctcaatatcaacccactgctcttgcttccacctgctccgcctccccttctttatggc |
1701658 |
T |
|
| Q |
421 |
atgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtc |
469 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
1701659 |
atgctcgtttcggtcatccctctttcagagttcttgcacaaatgatgtc |
1701707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 5400031 - 5400124
Alignment:
| Q |
54 |
ctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctcta |
147 |
Q |
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|||||||||||||| | || || ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
5400031 |
ctgaacaatatgcacatccattcagaatatgatggtcccgaggaagttcaaattggtgatggtacaggtttaaaaatttctcatgttggctcta |
5400124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 26593146 - 26593053
Alignment:
| Q |
49 |
caaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttgg |
142 |
Q |
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|||||||||| |||||||| ||||||| ||||||||||| || |||||||| || ||||||||||||||||||||||||||||| |||||||| |
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| T |
26593146 |
caaatctgaataatatgcacattcactctgaatatgatggcccagaagaagtgcaaattggtgatggtacaggtttgaaaatttcccatgttgg |
26593053 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 3541028 - 3541121
Alignment:
| Q |
54 |
ctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctcta |
147 |
Q |
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|||||||||||||| | || || |||||||||||||| || |||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
3541028 |
ctgaacaatatgcacatccattcagaatatgatggtccagaggaagttcaaattggtgatggtacaggtttaaaaatttctcatgttggctcta |
3541121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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