View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8916_low_7 (Length: 448)
Name: NF8916_low_7
Description: NF8916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8916_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 32439371 - 32439798
Alignment:
| Q |
19 |
cgaagaagaagataatggggcgagaaacacgaggaggagaggaatgagaaagattcgaagctgcagcttcatgttgttgattgttagatcgaatgtgttt |
118 |
Q |
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| T |
32439371 |
cgaagaagaagataatggggcgagaaacacgaggaggagaggaatgagaaagattcgaagctgcagcttcatgttgttgattgttagatcgaatgtgttt |
32439470 |
T |
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| Q |
119 |
agaaattgaacaaaaggggtggtgtagatagcgacagaaacgtcccgttatggacactagcgtatcgagcagcgactgctactgactcgtcgtcgtgaaa |
218 |
Q |
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| T |
32439471 |
agaaattgaacaaaagggggggtgtagatagcgacagaaacgtcccgttatggacaccagcgtatcgagcagcgactgctactgac---tcttcgtgaaa |
32439567 |
T |
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| Q |
219 |
ttagatagatttcagaatcctcattcaagatcatcaccaaattcgtaacagttttgtcagatttttatgtctgtcaaaatttgaagttaaatttctcgaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32439568 |
ttagatagatttcagaatcctcattcaagatcatcaccaaattcgtaccagttttgtcagatttttatgtctatcaaaatttgaagttaaatttctcgaa |
32439667 |
T |
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| Q |
319 |
aaattaaattcctgatgttactcagtta-ttaattgtaaggaattattttaaaatataaacgtcttttaaattactatatattcatttgnnnnnnnnnnn |
417 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32439668 |
aaattaaattcctgatgttactcagttatttaattgtaaggaattattttaaaatataaacgtcttttaaattactatatattcatttgtttttcttttt |
32439767 |
T |
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| Q |
418 |
naattaatatagaaaaatcctactaattcac |
448 |
Q |
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|||||||||| ||||||||||||||||||| |
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| T |
32439768 |
taattaatatacaaaaatcctactaattcac |
32439798 |
T |
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