View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8916_low_9 (Length: 427)
Name: NF8916_low_9
Description: NF8916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8916_low_9 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 232419 - 232811
Alignment:
| Q |
18 |
taggacactgagaaataggagacactgtgacagggataaaatggaggtagaatacaagaaaaacatggatgcgttgatgtctaagatcgaaagtaccgcg |
117 |
Q |
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| T |
232419 |
taggacactgagaaataggagacactgtgacagggataaaatagaggtagaatacaagaaaaacatggatgcgttgatgtctaagatcgaaagtacagcg |
232518 |
T |
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| Q |
118 |
ccaaatttgaaggcattgaaacagtatgatgccctggatgaaaaagaaagacttataactgaagagtttgaggctgtcatgaaagaagagaaggaaaaaa |
217 |
Q |
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| T |
232519 |
ccaaatttgaaggcattgaaacagtatgatgccctggatgaaaaagaaagacttataactgaagagtttgaggctgtcatgaaagaagagaaggaaagaa |
232618 |
T |
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| Q |
218 |
cagatagtttcaatgcgattaagcaggagagatataatttgttcatgggtgctttcaaccgtatatctggtaacatagataaaatctacaaacaacttac |
317 |
Q |
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| T |
232619 |
cagatagtttcaatgcgattaagcaggagagatataatttgttcatgggtgctttcaaccgtatatctggtaacatagataaaatctacaaacaacttac |
232718 |
T |
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| Q |
318 |
aaagagcaacacgcatctttttggtggaacagcatacctatatttggaaaatgaagacgatccatttcaacatggcatcaagtacactgccat |
410 |
Q |
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| T |
232719 |
aaagagcaacacacatctttttggtggaacagcatacctatatttggaaaatgaagacgatccatttcaacatggcatcaagtacactgccat |
232811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 247 - 407
Target Start/End: Original strand, 30593602 - 30593762
Alignment:
| Q |
247 |
agatataatttgttcatgggtgctttcaaccgtatatctggtaacatagataaaatctacaaacaacttacaaagagcaacacgcatctttttggtggaa |
346 |
Q |
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| T |
30593602 |
agatatgatttgttcatggatgctttcaaccatatcgctggtaatatagataaaatttacaaacaacttacaaagagcaacacacatcctctgggtggaa |
30593701 |
T |
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| Q |
347 |
cagcatacctatatttggaaaatgaagacgatccatttcaacatggcatcaagtacactgc |
407 |
Q |
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| T |
30593702 |
cagcatacttaaatttggaaaatgaagacgatccatttctgcacggcatgaagtacactgc |
30593762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 30592087 - 30592287
Alignment:
| Q |
32 |
ataggagacactgtgacagggataaaatggaggtagaatacaagaaaaacatggatgcgttgatgtctaagatcgaaagtaccgcgccaaatttgaaggc |
131 |
Q |
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| T |
30592087 |
ataggagacaatctgacagggataaaatagaggtagactttaagcaaaaaatggatgcattgatatctgagatcgaaagaacagcaccaaatttgaaggc |
30592186 |
T |
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| Q |
132 |
attgaaacagtatgatgccctggatgaaaaagaaagacttataactgaagagtttgaggctgtcatgaaagaagagaaggaaaaaacagatagtttcaat |
231 |
Q |
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| T |
30592187 |
attggaccagtatgaggctctgcttggaaaagaaagagctgtaactgaagagtttgaagctgtcaggaaagaagagaaggaaaaagccgatagattcaat |
30592286 |
T |
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| Q |
232 |
g |
232 |
Q |
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| T |
30592287 |
g |
30592287 |
T |
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