View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8917_low_11 (Length: 297)

Name: NF8917_low_11
Description: NF8917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8917_low_11
NF8917_low_11
[»] chr1 (1 HSPs)
chr1 (1-297)||(41988297-41988607)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 41988297 - 41988607
Alignment:
Q  1 actgccatatacgtaggaattttgataataaagagaatactgtttaatgtgctgaaaagataagaaaaagccttgagtctgatggagatgtaactggaat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41988297 actgccatatacgtaagaattttgataataaagagaatactgtttaatgtgctgaaaagataagaaaaagccttgagtctgatggagatgtaactggaat 41988396  T
Q  101 cttttgaccgcacgtgtaaatctcctttatgaaagatatgtta-------------tgaaagatcgaaatcttgacaataacatgacattatcttagtat 187  Q
    |||||||||||||||||||||||||||||||||||||||||||             |||| |||||||||||||||||||||||||||||||||||||||    
T  41988397 cttttgaccgcacgtgtaaatctcctttatgaaagatatgttatgagaaggtgtgttgaatgatcgaaatcttgacaataacatgacattatcttagtat 41988496  T
Q  188 gacactcttttttgtttattg-tttttcttgacagctgtgatctctatagagcatgaaaagacattgtaacttcttactttgatttttgtatttcatttg 286  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41988497 gacactcttttttgtttattgttttttcttgacagctgtgatccctatagagcatgaaaagacattgtaacttcttactttgatttttgtatttcatttg 41988596  T
Q  287 attgagtgaaa 297  Q
    |||||||||||    
T  41988597 attgagtgaaa 41988607  T

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