View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8917_low_7 (Length: 386)
Name: NF8917_low_7
Description: NF8917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8917_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 138 - 369
Target Start/End: Complemental strand, 36867209 - 36866977
Alignment:
| Q |
138 |
tgtgtaaagtattttctgagggaaaagaatagccatcatcctaatgtgatactgcacaa-tatttatagactactaaagcaagtgttaattgtggattcc |
236 |
Q |
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| T |
36867209 |
tgtgtaaagtattttctgagggaaaagaatagccatcatcctaatgtgatactgcacaaatatttatagactactaaagcaagtgttaattgtggattcc |
36867110 |
T |
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| Q |
237 |
tccaattttattttaggnnnnnnncaagatgtgactatatgaaagtaatacaataattataaaacaggaacaactcagaagatttcataccataacccga |
336 |
Q |
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| T |
36867109 |
tccaattttattttaggaaaaaaacaagatgtgattatatgaaagtaatacaataattataaaacaggaacaactcagaagatttcataccataacccga |
36867010 |
T |
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| Q |
337 |
tatgaatgattgcagaaaagcagcctatgcaaa |
369 |
Q |
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| T |
36867009 |
tatgaatgattgcagaaaagcaacctatgcaaa |
36866977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 43130568 - 43130466
Alignment:
| Q |
13 |
ctttggtgtttttgtaacgaacccatagtgccccaaaatctcaaacccccaatcccaaatattcaacacaatgtaagtaccaatcccaccaataagccca |
112 |
Q |
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| T |
43130568 |
ctttggtgtttttgtaacgaacccatagtgccccaaaatctcaaacccccaatcccaaatattcaacacaatgtaagtaccaatcccaccaataagccca |
43130469 |
T |
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| Q |
113 |
tat |
115 |
Q |
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| T |
43130468 |
tat |
43130466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 36849478 - 36849391
Alignment:
| Q |
262 |
aagatgtgactatatgaaagtaatacaataattataaaacaggaacaactcagaagatttcataccataacccgatatgaatgattgc |
349 |
Q |
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| T |
36849478 |
aagacgtgactacgtgaaagtaacacaataattataaagcaggaacaactcagaagatttcataccataacccgatatggatgattgc |
36849391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 36850926 - 36850849
Alignment:
| Q |
143 |
aaagtattttctgagggaaaagaatagccatcatcctaatgtgatactgcacaatatttatagactactaaagcaagt |
220 |
Q |
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| T |
36850926 |
aaagtattttccgagggaaaagaatagctatcatcctaatgtgatactgcacaatatttatagactacaaaagaaagt |
36850849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 349
Target Start/End: Complemental strand, 36861286 - 36861218
Alignment:
| Q |
283 |
aatacaataattataaaacaggaacaactca--gaagatttcataccataacccgatatgaatgattgc |
349 |
Q |
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| T |
36861286 |
aatacaataattataaaacaggaacatctaaaagaagatttcataccataacccgatatggatgattgc |
36861218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 36861411 - 36861367
Alignment:
| Q |
158 |
ggaaaagaatagccatcatcctaatgtgatactgcacaatattta |
202 |
Q |
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| T |
36861411 |
ggaaaagaatagctatcagcctaatgtgatactgcagaatattta |
36861367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 37372017 - 37372049
Alignment:
| Q |
180 |
aatgtgatactgcacaatatttatagactacta |
212 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
37372017 |
aatgagatactgcacaatatttatagactacta |
37372049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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