View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_high_1 (Length: 770)
Name: NF8918_high_1
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_high_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 705; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 34 - 754
Target Start/End: Original strand, 36290236 - 36290956
Alignment:
| Q |
34 |
cacagacataacctagaccgatgttaacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcct |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290236 |
cacagacataacctagaccgatgttaacatcatcagcggtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcct |
36290335 |
T |
|
| Q |
134 |
caaaccagttttatcaaccatttgtgacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttcagga |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36290336 |
caaaccagttttatcaaccatttgtgacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcgagataatactttcttcagga |
36290435 |
T |
|
| Q |
234 |
gttatatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaacaggtacacgtgtgatacctggaagatcaaccatggtaa |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290436 |
gttatatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaacaggtacacgtgtgatacctggaagatcaaccatggtaa |
36290535 |
T |
|
| Q |
334 |
gatcaggaacaccgttcttcttgacaatcaatgtcaaaggagtgttggaaatccctttggcagaaccagcaatttcctcagtagctatgtttattgcatc |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290536 |
gatcaggaacaccgttcttcttgacaatcaatgtcaaaggagtgttggaaatccctttggcagaaccagcaatttcctcagtagctatgtttattgcatc |
36290635 |
T |
|
| Q |
434 |
agaaacatctttttcatcagtgaaaactgttttgctattgaattctaacaagagttctggttttgaaagtggatgattctgaaggcgcataattaagggt |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36290636 |
agaaacatctttttcatcagtgaaaactgttttgccattgaattctaacaagagttctggttttgaaagtggatgattctgaaggcgcataattaagggt |
36290735 |
T |
|
| Q |
534 |
actcttgtgcagattccttgtccacgtggcaagctgataccagctaaagattcaaggacactggactttcctgaagattgatctccaacaacaacaattg |
633 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36290736 |
actctcgtgcagattccttgtccacgtggcaagctgataccagctaaagattcaaggacactggactttcctgaagattgatctccaacaacaacaattg |
36290835 |
T |
|
| Q |
634 |
ttggaagctgaattccttctttggcaatgttgagacgccttagattctcaagggcatcgagaactggacgtattttttcattgtatgatgaaacaattgg |
733 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36290836 |
ttggaagctgaattccttctttggcaatgttgagacgccttagattctcaagggcatcgagaactggacgtattttttcattgtatgatgaaacaattgg |
36290935 |
T |
|
| Q |
734 |
tgcaacaacagaaatgggtag |
754 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
36290936 |
tgcaacaacagaaatgggtag |
36290956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 54 - 738
Target Start/End: Original strand, 36312739 - 36313423
Alignment:
| Q |
54 |
atgttaacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaacca |
153 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| |||||||| |||||||| || ||||| |||||||| | |||||||||||||||||||||||||| |
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|
| T |
36312739 |
atgttaacatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttgttacaacagctaatgtcctcaaaccagttttatcaacca |
36312838 |
T |
|
| Q |
154 |
tttgtgacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttcaggagttatatactccataataat |
253 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||| || ||||||||||||||||| ||||| ||||| |
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|
| T |
36312839 |
tctgtgacatcctaatagactcacaagtactaaaatcaacagtagcagaaagaacattcaggataatgctctcttcaggagttatatagtccatgataat |
36312938 |
T |
|
| Q |
254 |
atctttaatctgatcatagatattatcaggttgaccatgaacaggtacacgtgtgatacctggaagatcaaccatggtaagatcaggaacaccgttcttc |
353 |
Q |
| |
|
||| |||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||||||| || |||||| |
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|
| T |
36312939 |
atccttaatctgatcataaatgttatcaggttgaccatgaacaggaacacgagttatacctggaagatcaaccattgtaaggtcaggaacgccattcttc |
36313038 |
T |
|
| Q |
354 |
ttgacaatcaatgtcaaaggagtgttggaaatccctttggcagaaccagcaatttcctcagtagctatgtttattgcatcagaaacatctttttcatcag |
453 |
Q |
| |
|
|| |||||||| |||| |||||||| |||||||||||||||| ||||||| || ||||||||| ||||||| |||||||| |||| | |||||||| |
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|
| T |
36313039 |
ttcacaatcaaagtcagtggagtgtttgaaatccctttggcagttccagcaagctcttcagtagctgtgtttatagcatcagagacatttgcttcatcag |
36313138 |
T |
|
| Q |
454 |
tgaaaactgttttgctattgaattctaacaagagttctggttttgaaagtggatgattctgaaggcgcataattaagggtactcttgtgcagattccttg |
553 |
Q |
| |
|
| ||||| ||||| ||| | || || | || ||||| | || ||| ||| || || || | ||||| || ||||| ||||| || |||||||| |
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|
| T |
36313139 |
ttaaaacctgtttgccattatactccaatacaagctctggctgtggaagcaaatggttttgcagcctcataaccaaaggtacccttgtacaaattccttg |
36313238 |
T |
|
| Q |
554 |
tccacgtggcaagctgataccagctaaagattcaaggacactggactttcctgaagattgatctccaacaacaacaattgttggaagctgaattccttct |
653 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| ||||| ||| |
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|
| T |
36313239 |
tccacgtggcaagctgataccagctaatgattcaaggacactagactttccagatgattgatctccaacaacaacaatggttggaagctggattccctct |
36313338 |
T |
|
| Q |
654 |
ttggcaatgttgagacgccttagattctcaagggcatcgagaactggacgtattttttcattgtatgatgaaacaattggtgcaa |
738 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| || ||||||||||| || ||||| || || || ||||||||||||| |
|
|
| T |
36313339 |
ttggcaatgttgagacgccttagattttcaagagcatcaagcactggacgtatcttctcattataagaagatacaattggtgcaa |
36313423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 59 - 229
Target Start/End: Original strand, 33579675 - 33579845
Alignment:
| Q |
59 |
aacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaaccatttgt |
158 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| ||||||||| || |||| | ||||||||| ||||||||||||||||||||| ||| | |
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|
| T |
33579675 |
aacatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttgaagtagcagcaagtgacctcaaaccagttttatcaacagtttct |
33579774 |
T |
|
| Q |
159 |
gacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttc |
229 |
Q |
| |
|
|||||||| | ||||||||||| | ||||||| |||||||||||| |||||||||||||| |||||||| |
|
|
| T |
33579775 |
gacatccttaatgactcacaagtagagaaatcaatagtagcagaaagaacattcaagataatgctttcttc |
33579845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 296
Target Start/End: Original strand, 33579866 - 33579949
Alignment:
| Q |
213 |
aagataatactttcttcaggagttatatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaaca |
296 |
Q |
| |
|
|||||||| |||||||| || |||| |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
33579866 |
aagataatgctttcttccataggtataaactccataataatatcttcaatttgatcataactattatcatgttgaaaatgaaca |
33579949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 9e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 59 - 229
Target Start/End: Complemental strand, 15997323 - 15997153
Alignment:
| Q |
59 |
aacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaaccatttgt |
158 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| ||||||||| || |||| | ||||||||| ||||||| ||||||||||||| ||| | |
|
|
| T |
15997323 |
aacatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttgaagtagcagcaagtgacctcaaatcagttttatcaacagtttct |
15997224 |
T |
|
| Q |
159 |
gacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttc |
229 |
Q |
| |
|
|||||||| | ||||||||||| | ||||||| |||||||||||| |||||||||||||| |||||||| |
|
|
| T |
15997223 |
gacatccttaatgactcacaagtagagaaatcaatagtagcagaaagaacattcaagataatgctttcttc |
15997153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 15997118 - 15997057
Alignment:
| Q |
235 |
ttatatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaaca |
296 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
15997118 |
ttataaactccataataatatcttcaatttgatcataactattatcatgttgaaaatgaaca |
15997057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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