View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_high_15 (Length: 293)
Name: NF8918_high_15
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 16966299 - 16966025
Alignment:
| Q |
1 |
ctctcataatgaaggcactgtttgggacctaattcctgatgatgtgaaagaaacctcgtatcctcatcaaaaagaaggttttgagttcatttggaaaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16966299 |
ctctcataatgaaggcactgtttgggacctaattcctgatgatgtgaaagaaacctcgtatcctcatcaaaaagaaggctttgagttcatttggaaaaac |
16966200 |
T |
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| Q |
101 |
ttgacaggacacatcgatcttcataagttgagtaaaagtgatcctcgcagggagggtggctgcattatctcccatgctcccggaaccggaaagacaaggt |
200 |
Q |
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||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16966199 |
ttgacaggaaacatcgatcttcacaagttgagtaaaaccgatcctcgcagggagggtggctgcattatctcccatgctcccggaaccggaaagacaaggt |
16966100 |
T |
|
| Q |
201 |
tgactataatgtttctcacgtcatatctgaaagtgtttcctaaatgcttgccagttattgttgcacctgcgagtt |
275 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16966099 |
tgactataatgtttctcatgtcatatctgaaagtgtttcctaaatgcttgcccgttattgttgcacctgcgagtt |
16966025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 16822239 - 16821965
Alignment:
| Q |
1 |
ctctcataatgaaggcactgtttgggacctaattcctgatgatgtgaaagaaacctcgtatcctcatcaaaaagaaggttttgagttcatttggaaaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
16822239 |
ctctcataatgaaggcactgtttgggacctaattcctgatgatgtgaaagaaaccttgtatcctcatcaactagaaggctttgagttcatttggaaaaac |
16822140 |
T |
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| Q |
101 |
ttgacaggacacatcgatcttcataagttgagtaaaagtgatcctcgcagggagggtggctgcattatctcccatgctcccggaaccggaaagacaaggt |
200 |
Q |
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| T |
16822139 |
ttgacaggacacatcgatcttcacaagttaagtaaaaccaatcctcgcagggagggtggctgcattatctcccatgctcccggaaccggaaagacaaggt |
16822040 |
T |
|
| Q |
201 |
tgactataatgtttctcacgtcatatctgaaagtgtttcctaaatgcttgccagttattgttgcacctgcgagtt |
275 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
16822039 |
tgactataatgtttctcatgtcatatctgaaagtgtttcctaaatgcttgccggttattgttgctcctgcgagtt |
16821965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 275
Target Start/End: Complemental strand, 17006004 - 17005736
Alignment:
| Q |
4 |
tcataatgaaggcactgtttgggacctaattcctgatgatgtgaaagaaacctcgtatcctcatcaaaaagaaggttttgagttcatttggaaaaacttg |
103 |
Q |
| |
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|||||| || ||||| ||||||||||||||||||| || ||||| ||| | |||||||||||| ||||||| ||||| |||||||||||||||||| |
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| T |
17006004 |
tcataaagagggcacagtttgggacctaattcctggtg---tgaaacaaaaattatatcctcatcaacaagaaggctttgaattcatttggaaaaacttg |
17005908 |
T |
|
| Q |
104 |
acaggacacatcgatcttcataagttgagtaaaagtgatcctcgcagggagggtggctgcattatctcccatgctcccggaaccggaaagacaaggttga |
203 |
Q |
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| T |
17005907 |
gcaggaaataccaatcttcgcaagttaaagaaagccgttccttgcagggagggtggctgcattatttcccatgctcctggaaccggaaagacaaggctga |
17005808 |
T |
|
| Q |
204 |
ctataatgtttctcacgtcatatctgaaagtgtttcctaaatgcttgccagttattgttgcacctgcgagtt |
275 |
Q |
| |
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|| || | ||||||| | | ||| ||||||| || || ||||||||||| ||||||||||| |||||||||| |
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| T |
17005807 |
ctgtagtatttctcatggcttatttgaaagtattcccgaaatgcttgccggttattgttgctcctgcgagtt |
17005736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 16990473 - 16990211
Alignment:
| Q |
10 |
tgaaggcactgtttgggacctaattcctgatgatgtgaaagaaacctcgtatcctcatcaaaaagaaggttttgagttcatttggaaaaacttgacagga |
109 |
Q |
| |
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||||||| | |||||||||||||||||||||| ||||||||| | |||||||||||| ||||||| ||||| |||||||||||||||||| ||||| |
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| T |
16990473 |
tgaaggctcagtttgggacctaattcctgatg---tgaaagaaaaattatatcctcatcaacaagaaggatttgaattcatttggaaaaacttggcagga |
16990377 |
T |
|
| Q |
110 |
cacatcgatcttcataagttgagtaaaagtgatcctcgcagggagggtggctgcattatctcccatgctcccggaaccggaaagacaaggttgactataa |
209 |
Q |
| |
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|||| || ||||| ||||| | || |||||||| ||||| |||||||||||||| || |||||||| ||||| || |||||||||||||| ||| |
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| T |
16990376 |
aacattgagcttcaaaagttaaagaatgccgatcctcgaagggaaggtggctgcattatttcacatgctcctggaactggtaagacaaggttgacaatag |
16990277 |
T |
|
| Q |
210 |
tgtttctcacgtcatatctgaaagtgtttcctaaatgcttgccagttattgttgcacctgcgagtt |
275 |
Q |
| |
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|||||||| | | ||| ||||||| ||||| ||||||||| |||||||||||||||| |||| |
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| T |
16990276 |
agtttctcaaggcgtatttgaaagtttttccgggatgcttgccgattattgttgcacctgcaagtt |
16990211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 16975166 - 16974907
Alignment:
| Q |
8 |
aatgaaggcactgtttgggacctaattcctgatgatgtgaaagaaacctcgtatcctcatcaaaaagaaggttttgagttcatttggaaaaacttgacag |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| ||||| |||| | ||||||||||||| |||||| ||||| |||||||||||||||||| ||| |
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| T |
16975166 |
aatgaaggcacagtttgggacctaattccagatt---tgaaacaaactttatatcctcatcaaatagaaggctttgaattcatttggaaaaacttggcag |
16975070 |
T |
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| Q |
108 |
gacacatcgatcttcataagttgagtaaaagtgatcctcgcagggagggtggctgcattatctcccatgctcccggaaccggaaagacaaggttgactat |
207 |
Q |
| |
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|||||| || ||||| ||||| | || |||| | |||| || ||||| || || || || |||||||| |||||||||||||||||| |||| || |
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| T |
16975069 |
gacacactgagcttcaaaagttaaagaatgacgatctttgcagcgaaggtggatgtatcatttctcatgctcctggaaccggaaagacaaggctgaccat |
16974970 |
T |
|
| Q |
208 |
aatgtttctcacgtcatatctgaaagtgtttcctaaatgcttgccagttattgttgcacctgc |
270 |
Q |
| |
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||||||||| | ||||| |||||| ||||| |||||||||||| ||||||| || ||||| |
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| T |
16974969 |
ggtgtttctcaaggcatatttgaaagcctttcccaaatgcttgccaattattgtcgctcctgc |
16974907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 270
Target Start/End: Original strand, 10603450 - 10603661
Alignment:
| Q |
59 |
tatcctcatcaaaaagaaggttttgagttcatttggaaaaacttgacaggacacatcgatcttcataagttgagtaaaagtgatcctcgcagggagggtg |
158 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||||||||||||| ||||| | | | ||||| ||||| | || |||||| |||| || |||| |
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| T |
10603450 |
tatcctcatcaacaagaaggctttgaattcatttggaaaaacttggcaggaagcgtaaagcttcaaaagttaaagaatgtcgatccttgcagtgaaggtg |
10603549 |
T |
|
| Q |
159 |
gctgcattatctcccatgctcccggaaccggaaagacaaggttgactataatgtttctcacgtcatatctgaaagtgtttcctaaatgcttgccagttat |
258 |
Q |
| |
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|||||||||| || |||||||| || ||||||||||||||| |||| ||| ||||||||| | ||||| |||||| ||||| ||||||||||| |||| |
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| T |
10603550 |
gctgcattatttctcatgctcctggtaccggaaagacaaggctgaccatagtgtttctcaaggcatatttgaaagcctttcccaaatgcttgccgattat |
10603649 |
T |
|
| Q |
259 |
tgttgcacctgc |
270 |
Q |
| |
|
||| || ||||| |
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|
| T |
10603650 |
tgtcgctcctgc |
10603661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 35264910 - 35265169
Alignment:
| Q |
8 |
aatgaaggcactgtttgggacctaattcctgatgatgtgaaagaaacctcgtatcctcatcaaaaagaaggttttgagttcatttggaaaaacttgacag |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||||| || ||||| ||| | |||||||||||| ||||||| ||||| ||||||||||||||| || ||| |
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| T |
35264910 |
aatgaaggcacagtttgggacctaattcctggtg---tgaaacaaaaattatatcctcatcaacaagaaggctttgaattcatttggaaaaacatggcag |
35265006 |
T |
|
| Q |
108 |
gacacatcgatcttcataagttgagtaaaagtgatcctcgcagggagggtggctgcattatctcccatgctcccggaaccggaaagacaaggttgactat |
207 |
Q |
| |
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|||||| || ||||| ||||| | || |||||| ||| || |||||||| ||||| || |||||||| |||||||||||||||||| |||| || |
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|
| T |
35265007 |
gacacactgagcttcaaaagttaaagaatgccgatccttccagcgaaggtggctgtattatttctcatgctcctggaaccggaaagacaaggctgaccat |
35265106 |
T |
|
| Q |
208 |
aatgtttctcacgtcatatctgaaagtgtttcctaaatgcttgccagttattgttgcacctgc |
270 |
Q |
| |
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| ||||||||| | ||||| |||||| ||||| ||||||||||| |||||||||| ||||| |
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|
| T |
35265107 |
agtgtttctcaaggcatatttgaaagcctttcccaaatgcttgccgattattgttgctcctgc |
35265169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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