View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8918_high_4 (Length: 526)
Name: NF8918_high_4
Description: NF8918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8918_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 157 - 503
Target Start/End: Original strand, 48007571 - 48007907
Alignment:
| Q |
157 |
tcaccaccttagcttgtaaattctgattttctgttgggaaatttggatatggtacagtttctttcttgcaaggttttgaatgaaatttgctagattaccg |
256 |
Q |
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| T |
48007571 |
tcaccaccttagcttgtaaattttgattttctgttggaaaatttggatatggtacagtttctttcttgcaaggttttgaatgaaatttgctagattaccg |
48007670 |
T |
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| Q |
257 |
aatagaaaatagggatatgatagctatatggtcgaccaaaggagattaggtttagtgaaaagtgtcagacgaaatgttcatatttagtgttaaatagctt |
356 |
Q |
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| T |
48007671 |
aatagaaaatagggatatgatatatatatggtcgaacaaaggagattaggtttagtgaaaagtgtcagacgaaatgttcatatttagtgttaaatagctt |
48007770 |
T |
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| Q |
357 |
ctcgaatatgattcttnnnnnnngatgatgtctatggtcaaactattactttcatgcattcttggttctccttctccatctaataataatagtcaaatat |
456 |
Q |
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| T |
48007771 |
ctcgaatatgattctt-aaaaaagatgatgtatatggtcaaactattactttcatgcattcttggttctccatc---------taataatagtcaaatat |
48007860 |
T |
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| Q |
457 |
tgtgctaacattgatgtcactcgcacatgagacttgcatggccatca |
503 |
Q |
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| T |
48007861 |
tgtgttaacattgatgtcactcgcacatgagacttgcatggccatca |
48007907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 48007476 - 48007571
Alignment:
| Q |
9 |
agaagcagagaagggtatccttgattggcttaaagctaacaagtgatcatatatttattgnnnnnnnncctcaattactagtgtagctagctccaat |
105 |
Q |
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| T |
48007476 |
agaagcagaaaagggtatccttgattggcttaaagctaacaagtgatcatatatttattgtttttttt-ctcaattactagtgtagctagctccaat |
48007571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 1604190 - 1604338
Alignment:
| Q |
98 |
gctccaatgacattcaattctacaccttacaattggacatcatatccatgtagttgcactcaccaccttagcttgtaaattctgattttctgttgggaaa |
197 |
Q |
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| T |
1604190 |
gctccaatgacattcaattctacaccttaaaattggacattatatccatgtagttgcactcaccacct-agcttgtaaattttgattttctgttgggaaa |
1604288 |
T |
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| Q |
198 |
tttggatatggtacagtttctttcttgcaaggttttgaatgaaatttgct |
247 |
Q |
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| T |
1604289 |
ttcggatatggtacagtttttttcttgcaaggttttgtatgaaatttgct |
1604338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 1604083 - 1604129
Alignment:
| Q |
9 |
agaagcagagaagggtatccttgattggcttaaagctaacaagtgat |
55 |
Q |
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| T |
1604083 |
agaagcagaaaagggtatccttgattggcttaaagctaacaagtgat |
1604129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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